Analysis of interatomic Contacts of Structural Units in PDB entry:
5THZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5THZ entry

There are 2 chains in PDB entry 5THZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 TYR -5SER 381
A
 LEU 6SER 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5THZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
8 24Right-handed alpha
Helix 2
AA2
B
25 27Right-handed 310
Helix 3
AA3
B
28 54Right-handed alpha
Helix 4
AA4
B
66 74Right-handed alpha
Helix 5
AA5
B
76 78Right-handed 310
Helix 6
AA6
B
79 93Right-handed alpha
Helix 7
AA7
B
113 125Right-handed alpha
Helix 8
AA8
B
128 140Right-handed alpha
Helix 9
AA9
B
141 147Right-handed alpha
Helix 10
AB1
B
151 157Right-handed alpha
Helix 11
AB2
B
163 172Right-handed alpha
Helix 12
AB3
B
172 190Right-handed alpha
Helix 13
AB4
B
211 216Right-handed alpha
Helix 14
AB5
B
217 219Right-handed 310
Helix 15
AB6
B
220 222Right-handed 310
Helix 16
AB7
B
232 243Right-handed alpha
Helix 17
AB8
B
259 264Right-handed 310
Helix 18
AB9
B
278 282Right-handed 310
Helix 19
AC1
B
284 295Right-handed alpha
Helix 20
AC2
B
311 316Right-handed alpha
Helix 21
AC3
B
317 326Right-handed 310
Helix 22
AC4
B
340 351Right-handed alpha
Helix 23
AC5
B
366 371Right-handed alpha
Helix 24
AC6
A
8 27Right-handed alpha
Helix 25
AC7
A
28 54Right-handed alpha
Helix 26
AC8
A
65 74Right-handed alpha
Helix 27
AC9
A
76 78Right-handed 310
Helix 28
AD1
A
79 93Right-handed alpha
Helix 29
AD2
A
113 123Right-handed alpha
Helix 30
AD3
A
125 127Right-handed 310
Helix 31
AD4
A
128 140Right-handed alpha
Helix 32
AD5
A
141 147Right-handed alpha
Helix 33
AD6
A
152 157Right-handed alpha
Helix 34
AD7
A
163 169Right-handed alpha
Helix 35
AD8
A
172 191Right-handed alpha
Helix 36
AD9
A
211 216Right-handed alpha
Helix 37
AE1
A
217 219Right-handed 310
Helix 38
AE2
A
232 243Right-handed alpha
Helix 39
AE3
A
259 263Right-handed 310
Helix 40
AE4
A
278 282Right-handed 310
Helix 41
AE5
A
284 295Right-handed alpha
Helix 42
AE6
A
311 316Right-handed alpha
Helix 43
AE7
A
317 326Right-handed 310
Helix 44
AE8
A
340 351Right-handed alpha
Helix 45
AE9
A
366 370Right-handed 310
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There are 4 sheets in PDB entry 5THZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
102 105anti-parallel
Strand 3
B
96 99anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 253first strand
Strand 2
B
224 230parallel
Strand 3
B
199 204parallel
Strand 4
B
270 276parallel
Strand 5
B
296 307parallel
Strand 6
B
372 379anti-parallel
Strand 7
B
353 359anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
102 105anti-parallel
Strand 3
A
96 99anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 253first strand
Strand 2
A
224 230parallel
Strand 3
A
199 204parallel
Strand 4
A
270 276parallel
Strand 5
A
296 307parallel
Strand 6
A
372 379anti-parallel
Strand 7
A
353 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il