Analysis of interatomic Contacts of Structural Units in PDB entry:
5TI8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TI8 entry

There are 2 chains in PDB entry 5TI8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 36LEU 453
B
 ARG 36LEU 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 5TI8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 63Right-handed alpha
Helix 2
AA2
A
70 84Right-handed alpha
Helix 3
AA3
A
96 109Right-handed alpha
Helix 4
AA4
A
121 140Right-handed alpha
Helix 5
AA5
A
189 194Right-handed alpha
Helix 6
AA6
A
198 218Right-handed alpha
Helix 7
AA7
A
242 254Right-handed alpha
Helix 8
AA8
A
274 280Right-handed alpha
Helix 9
AA9
A
289 293Right-handed 310
Helix 10
AB1
A
305 313Right-handed alpha
Helix 11
AB2
A
327 344Right-handed alpha
Helix 12
AB3
A
345 353Right-handed alpha
Helix 13
AB4
A
353 365Right-handed alpha
Helix 14
AB5
A
366 368Right-handed 310
Helix 15
AB6
A
399 411Right-handed alpha
Helix 16
AB7
A
430 453Right-handed alpha
Helix 17
AB8
B
58 63Right-handed alpha
Helix 18
AB9
B
70 84Right-handed alpha
Helix 19
AC1
B
96 109Right-handed alpha
Helix 20
AC2
B
121 140Right-handed alpha
Helix 21
AC3
B
189 194Right-handed alpha
Helix 22
AC4
B
198 218Right-handed alpha
Helix 23
AC5
B
242 254Right-handed alpha
Helix 24
AC6
B
274 280Right-handed alpha
Helix 25
AC7
B
289 293Right-handed 310
Helix 26
AC8
B
305 313Right-handed alpha
Helix 27
AC9
B
327 344Right-handed alpha
Helix 28
AD1
B
345 353Right-handed alpha
Helix 29
AD2
B
353 365Right-handed alpha
Helix 30
AD3
B
366 368Right-handed 310
Helix 31
AD4
B
398 411Right-handed alpha
Helix 32
AD5
B
430 453Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5TI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
53 56parallel
Strand 3
A
45 48anti-parallel
Strand 4
A
37 42anti-parallel
Strand 5
B
92 93parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
B
37 42parallel
Strand 3
B
45 48anti-parallel
Strand 4
B
53 55anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
300 304anti-parallel
Strand 3
A
285 288anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
147 151parallel
Strand 3
A
222 227parallel
Strand 4
A
257 260parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 377first strand
Strand 2
A
380 385anti-parallel
Strand 3
A
420 423anti-parallel
Strand 4
A
415 417anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 119first strand
Strand 2
B
300 304anti-parallel
Strand 3
B
285 288anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 185first strand
Strand 2
B
147 151parallel
Strand 3
B
222 227parallel
Strand 4
B
257 260parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 377first strand
Strand 2
B
380 385anti-parallel
Strand 3
B
420 423anti-parallel
Strand 4
B
415 417anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il