Analysis of interatomic Contacts of Structural Units in PDB entry:
5TIB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TIB entry

There are 2 chains in PDB entry 5TIB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	PRO 1406
B	GLU 3	GLY 1405

There are 52 helices in PDB entry 5TIB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	42	52	Right-handed alpha
Helix 3	AA3	A	66	73	Right-handed alpha
Helix 4	AA4	A	82	87	Right-handed alpha
Helix 5	AA5	A	90	97	Right-handed alpha
Helix 6	AA6	A	131	142	Right-handed alpha
Helix 7	AA7	A	153	164	Right-handed alpha
Helix 8	AA8	A	185	201	Right-handed alpha
Helix 9	AA9	A	209	219	Right-handed alpha
Helix 10	AB1	A	228	230	Right-handed 310
Helix 11	AB2	A	231	238	Right-handed alpha
Helix 12	AB3	A	272	283	Right-handed alpha
Helix 13	AB4	A	286	297	Right-handed alpha
Helix 14	AB5	A	304	312	Right-handed alpha
Helix 15	AB6	A	314	327	Right-handed alpha
Helix 16	AB7	A	334	352	Right-handed alpha
Helix 17	AB8	A	356	1225	Right-handed alpha
Helix 18	AB9	A	1248	1262	Right-handed alpha
Helix 19	AC1	A	1264	1277	Right-handed alpha
Helix 20	AC2	A	1281	1299	Right-handed alpha
Helix 21	AC3	A	1302	1306	Right-handed 310
Helix 22	AC4	A	1308	1314	Right-handed alpha
Helix 23	AC5	A	1322	1338	Right-handed alpha
Helix 24	AC6	A	1341	1353	Right-handed alpha
Helix 25	AC7	A	1354	1366	Right-handed alpha
Helix 26	AC8	A	1384	1405	Right-handed alpha
Helix 27	AC9	B	16	32	Right-handed alpha
Helix 28	AD1	B	42	53	Right-handed alpha
Helix 29	AD2	B	66	73	Right-handed alpha
Helix 30	AD3	B	82	87	Right-handed alpha
Helix 31	AD4	B	90	97	Right-handed alpha
Helix 32	AD5	B	131	142	Right-handed alpha
Helix 33	AD6	B	153	164	Right-handed alpha
Helix 34	AD7	B	185	201	Right-handed alpha
Helix 35	AD8	B	209	219	Right-handed alpha
Helix 36	AD9	B	228	230	Right-handed 310
Helix 37	AE1	B	231	238	Right-handed alpha
Helix 38	AE2	B	272	283	Right-handed alpha
Helix 39	AE3	B	286	297	Right-handed alpha
Helix 40	AE4	B	304	312	Right-handed alpha
Helix 41	AE5	B	314	327	Right-handed alpha
Helix 42	AE6	B	335	352	Right-handed alpha
Helix 43	AE7	B	356	1224	Right-handed alpha
Helix 44	AE8	B	1248	1262	Right-handed alpha
Helix 45	AE9	B	1264	1278	Right-handed alpha
Helix 46	AF1	B	1281	1299	Right-handed alpha
Helix 47	AF2	B	1302	1306	Right-handed 310
Helix 48	AF3	B	1308	1313	Right-handed alpha
Helix 49	AF4	B	1322	1339	Right-handed alpha
Helix 50	AF5	B	1341	1352	Right-handed alpha
Helix 51	AF6	B	1354	1365	Right-handed alpha
Helix 52	AF7	B	1384	1404	Right-handed alpha

There are 11 sheets in PDB entry 5TIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	6	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	106	111	anti-parallel
Strand 6	A	301	302	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	6	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	328	329	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	175	182	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	253	254	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	6	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	106	111	anti-parallel
Strand 6	B	301	302	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	6	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	328	329	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	222	227	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	242	245	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	172	first strand
Strand 2	B	175	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TIB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TIB