Analysis of interatomic Contacts of Structural Units in PDB entry:
5TIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TIM entry

There are 2 chains in PDB entry 5TIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 250
B
 SER 2GLN 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5TIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1A
A
18 30Right-handed alpha
Helix 2
2A
A
48 54Right-handed alpha
Helix 3
3A
A
80 85Right-handed alpha
Helix 4
4FA
A
96 101Right-handed alpha
Helix 5
4A
A
106 118Right-handed alpha
Helix 6
5FA
A
131 135Right-handed alpha
Helix 7
5A
A
139 152Right-handed alpha
Helix 8
6BA
A
156 161Right-handed 310
Helix 9
6A
A
180 197Right-handed alpha
Helix 10
7BA
A
200 205Right-handed alpha
Helix 11
7A
A
216 223Right-handed alpha
Helix 12
8FA
A
235 238Right-handed 310
Helix 13
8A
A
242 247Right-handed alpha
Helix 14
1B
B
18 29Right-handed alpha
Helix 15
2B
B
48 54Right-handed alpha
Helix 16
3B
B
80 85Right-handed alpha
Helix 17
4FB
B
96 101Right-handed alpha
Helix 18
4B
B
106 118Right-handed alpha
Helix 19
5FB
B
131 135Right-handed alpha
Helix 20
5B
B
139 151Right-handed alpha
Helix 21
6BB
B
156 161Right-handed 310
Helix 22
6B
B
180 197Right-handed alpha
Helix 23
7BB
B
200 205Right-handed alpha
Helix 24
7B
B
219 224Right-handed alpha
Helix 25
8FB
B
235 238Right-handed 310
Helix 26
8B
B
242 247Right-handed alpha
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There are 2 sheets in PDB entry 5TIM. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
38 43parallel
Strand 3
A
60 64parallel
Strand 4
A
90 93parallel
Strand 5
A
122 127parallel
Strand 6
A
162 166parallel
Strand 7
A
207 210parallel
Strand 8
A
230 233parallel
Strand 9
A
7 11parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
38 42parallel
Strand 3
B
60 64parallel
Strand 4
B
90 93parallel
Strand 5
B
122 127parallel
Strand 6
B
162 166parallel
Strand 7
B
208 210parallel
Strand 8
B
230 233parallel
Strand 9
A
7 11parallel
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