Analysis of interatomic Contacts of Structural Units in PDB entry:
5TIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TIP entry

There are 3 chains in PDB entry 5TIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ASN 437
B	ALA 2	ASN 437
C	ALA 2	ALA 413

There are 64 helices in PDB entry 5TIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	10	Right-handed alpha
Helix 2	AA2	A	12	14	Right-handed 310
Helix 3	AA3	A	15	20	Right-handed alpha
Helix 4	AA4	A	87	92	Right-handed alpha
Helix 5	AA5	A	110	121	Right-handed alpha
Helix 6	AA6	A	122	134	Right-handed alpha
Helix 7	AA7	A	153	158	Right-handed alpha
Helix 8	AA8	A	159	162	Right-handed 310
Helix 9	AA9	A	166	168	Right-handed 310
Helix 10	AB1	A	212	222	Right-handed alpha
Helix 11	AB2	A	299	303	Right-handed 310
Helix 12	AB3	A	307	311	Right-handed 310
Helix 13	AB4	A	331	343	Right-handed alpha
Helix 14	AB5	A	372	374	Right-handed 310
Helix 15	AB6	A	392	397	Right-handed alpha
Helix 16	AB7	A	407	411	Right-handed 310
Helix 17	AB8	B	3	10	Right-handed alpha
Helix 18	AB9	B	12	14	Right-handed 310
Helix 19	AC1	B	15	20	Right-handed alpha
Helix 20	AC2	B	87	92	Right-handed alpha
Helix 21	AC3	B	110	121	Right-handed alpha
Helix 22	AC4	B	122	134	Right-handed alpha
Helix 23	AC5	B	153	158	Right-handed alpha
Helix 24	AC6	B	159	162	Right-handed 310
Helix 25	AC7	B	166	168	Right-handed 310
Helix 26	AC8	B	212	222	Right-handed alpha
Helix 27	AC9	B	299	303	Right-handed 310
Helix 28	AD1	B	307	311	Right-handed 310
Helix 29	AD2	B	331	343	Right-handed alpha
Helix 30	AD3	B	372	374	Right-handed 310
Helix 31	AD4	B	392	397	Right-handed alpha
Helix 32	AD5	B	407	411	Right-handed 310
Helix 33	AD6	C	4	10	Right-handed alpha
Helix 34	AD7	C	12	14	Right-handed 310
Helix 35	AD8	C	15	20	Right-handed alpha
Helix 36	AD9	C	87	92	Right-handed alpha
Helix 37	AE1	C	110	121	Right-handed alpha
Helix 38	AE2	C	122	134	Right-handed alpha
Helix 39	AE3	C	153	158	Right-handed alpha
Helix 40	AE4	C	159	162	Right-handed 310
Helix 41	AE5	C	166	168	Right-handed 310
Helix 42	AE6	C	212	222	Right-handed alpha
Helix 43	AE7	C	299	303	Right-handed 310
Helix 44	AE8	C	307	311	Right-handed 310
Helix 45	AE9	C	331	343	Right-handed alpha
Helix 46	AF1	C	372	374	Right-handed 310
Helix 47	AF2	C	392	397	Right-handed alpha
Helix 48	AF3	C	407	411	Right-handed 310
Helix 49	AF4	D	4	10	Right-handed alpha
Helix 50	AF5	D	12	14	Right-handed 310
Helix 51	AF6	D	15	20	Right-handed alpha
Helix 52	AF7	D	87	92	Right-handed alpha
Helix 53	AF8	D	110	121	Right-handed alpha
Helix 54	AF9	D	122	134	Right-handed alpha
Helix 55	AG1	D	153	158	Right-handed alpha
Helix 56	AG2	D	159	162	Right-handed 310
Helix 57	AG3	D	166	168	Right-handed 310
Helix 58	AG4	D	212	222	Right-handed alpha
Helix 59	AG5	D	299	303	Right-handed 310
Helix 60	AG6	D	307	311	Right-handed 310
Helix 61	AG7	D	331	343	Right-handed alpha
Helix 62	AG8	D	372	374	Right-handed 310
Helix 63	AG9	D	392	397	Right-handed alpha
Helix 64	AH1	D	407	411	Right-handed 310

There are 48 sheets in PDB entry 5TIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	43	first strand
Strand 2	A	201	211	anti-parallel
Strand 3	A	66	77	anti-parallel
Strand 4	A	144	150	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	43	first strand
Strand 2	A	201	211	anti-parallel
Strand 3	A	66	77	anti-parallel
Strand 4	A	163	164	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	59	first strand
Strand 2	A	173	179	anti-parallel
Strand 3	A	93	100	anti-parallel
Strand 4	A	103	109	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	192	193	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	232	first strand
Strand 2	A	413	427	anti-parallel
Strand 3	A	237	238	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	413	427	anti-parallel
Strand 3	A	258	267	anti-parallel
Strand 4	A	369	370	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	370	first strand
Strand 2	A	258	267	anti-parallel
Strand 3	A	351	355	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	258	267	anti-parallel
Strand 3	A	413	427	anti-parallel
Strand 4	A	430	433	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	433	first strand
Strand 2	A	413	427	anti-parallel
Strand 3	A	224	232	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	252	first strand
Strand 2	A	377	383	anti-parallel
Strand 3	A	313	320	anti-parallel
Strand 4	A	323	324	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	252	first strand
Strand 2	A	377	383	anti-parallel
Strand 3	A	313	320	anti-parallel
Strand 4	A	329	330	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	388	first strand
Strand 2	A	403	405	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	43	first strand
Strand 2	B	201	211	anti-parallel
Strand 3	B	66	77	anti-parallel
Strand 4	B	144	150	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	43	first strand
Strand 2	B	201	211	anti-parallel
Strand 3	B	66	77	anti-parallel
Strand 4	B	163	164	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	55	59	anti-parallel
Strand 3	B	173	179	anti-parallel
Strand 4	B	93	100	anti-parallel
Strand 5	B	103	109	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	192	193	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	232	first strand
Strand 2	B	413	427	anti-parallel
Strand 3	B	237	238	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	238	first strand
Strand 2	B	413	427	anti-parallel
Strand 3	B	258	267	anti-parallel
Strand 4	B	369	370	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	370	first strand
Strand 2	B	258	267	anti-parallel
Strand 3	B	351	355	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	258	267	anti-parallel
Strand 3	B	413	427	anti-parallel
Strand 4	B	430	433	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	433	first strand
Strand 2	B	413	427	anti-parallel
Strand 3	B	224	232	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	253	first strand
Strand 2	B	377	383	anti-parallel
Strand 3	B	313	320	anti-parallel
Strand 4	B	323	324	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	253	first strand
Strand 2	B	377	383	anti-parallel
Strand 3	B	313	320	anti-parallel
Strand 4	B	329	330	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	388	first strand
Strand 2	B	403	405	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	43	first strand
Strand 2	C	201	211	anti-parallel
Strand 3	C	66	77	anti-parallel
Strand 4	C	144	150	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	43	first strand
Strand 2	C	201	211	anti-parallel
Strand 3	C	66	77	anti-parallel
Strand 4	C	163	164	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	55	59	anti-parallel
Strand 3	C	173	179	anti-parallel
Strand 4	C	93	100	anti-parallel
Strand 5	C	103	109	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	189	first strand
Strand 2	C	192	193	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	232	first strand
Strand 2	C	413	427	anti-parallel
Strand 3	C	237	238	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	238	first strand
Strand 2	C	413	427	anti-parallel
Strand 3	C	258	267	anti-parallel
Strand 4	C	369	370	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	370	first strand
Strand 2	C	258	267	anti-parallel
Strand 3	C	351	355	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	355	first strand
Strand 2	C	258	267	anti-parallel
Strand 3	C	413	427	anti-parallel
Strand 4	C	430	433	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	433	first strand
Strand 2	C	413	427	anti-parallel
Strand 3	C	224	232	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	253	first strand
Strand 2	C	377	383	anti-parallel
Strand 3	C	313	320	anti-parallel
Strand 4	C	323	324	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	253	first strand
Strand 2	C	377	383	anti-parallel
Strand 3	C	313	320	anti-parallel
Strand 4	C	329	330	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	388	first strand
Strand 2	C	403	405	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	43	first strand
Strand 2	D	201	211	anti-parallel
Strand 3	D	66	77	anti-parallel
Strand 4	D	144	150	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	43	first strand
Strand 2	D	201	211	anti-parallel
Strand 3	D	66	77	anti-parallel
Strand 4	D	163	164	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	55	59	anti-parallel
Strand 3	D	173	179	anti-parallel
Strand 4	D	93	100	anti-parallel
Strand 5	D	103	109	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	189	first strand
Strand 2	D	192	193	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	232	first strand
Strand 2	D	413	427	anti-parallel
Strand 3	D	237	238	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	238	first strand
Strand 2	D	413	427	anti-parallel
Strand 3	D	258	267	anti-parallel
Strand 4	D	369	370	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	370	first strand
Strand 2	D	258	267	anti-parallel
Strand 3	D	351	355	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	355	first strand
Strand 2	D	258	267	anti-parallel
Strand 3	D	413	427	anti-parallel
Strand 4	D	430	433	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	433	first strand
Strand 2	D	413	427	anti-parallel
Strand 3	D	224	232	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	253	first strand
Strand 2	D	377	383	anti-parallel
Strand 3	D	313	320	anti-parallel
Strand 4	D	323	324	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	253	first strand
Strand 2	D	377	383	anti-parallel
Strand 3	D	313	320	anti-parallel
Strand 4	D	329	330	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	388	first strand
Strand 2	D	403	405	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TIP