Analysis of interatomic Contacts of Structural Units in PDB entry:
5TIQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TIQ entry

There are 2 chains in PDB entry 5TIQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ASN 437
B	ALA 13	ASN 437

There are 30 helices in PDB entry 5TIQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	10	Right-handed alpha
Helix 2	AA2	A	12	14	Right-handed 310
Helix 3	AA3	A	15	20	Right-handed alpha
Helix 4	AA4	A	87	92	Right-handed alpha
Helix 5	AA5	A	110	121	Right-handed alpha
Helix 6	AA6	A	122	134	Right-handed alpha
Helix 7	AA7	A	153	158	Right-handed alpha
Helix 8	AA8	A	159	162	Right-handed 310
Helix 9	AA9	A	166	168	Right-handed 310
Helix 10	AB1	A	212	222	Right-handed alpha
Helix 11	AB2	A	299	303	Right-handed 310
Helix 12	AB3	A	307	311	Right-handed 310
Helix 13	AB4	A	331	343	Right-handed alpha
Helix 14	AB5	A	372	374	Right-handed 310
Helix 15	AB6	A	392	397	Right-handed alpha
Helix 16	AB7	A	407	411	Right-handed 310
Helix 17	AB8	B	15	20	Right-handed alpha
Helix 18	AB9	B	87	92	Right-handed alpha
Helix 19	AC1	B	110	121	Right-handed alpha
Helix 20	AC2	B	122	134	Right-handed alpha
Helix 21	AC3	B	153	158	Right-handed alpha
Helix 22	AC4	B	159	162	Right-handed 310
Helix 23	AC5	B	166	168	Right-handed 310
Helix 24	AC6	B	212	222	Right-handed alpha
Helix 25	AC7	B	299	303	Right-handed 310
Helix 26	AC8	B	307	311	Right-handed 310
Helix 27	AC9	B	331	343	Right-handed alpha
Helix 28	AD1	B	372	374	Right-handed 310
Helix 29	AD2	B	392	397	Right-handed alpha
Helix 30	AD3	B	407	411	Right-handed 310

There are 18 sheets in PDB entry 5TIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	43	first strand
Strand 2	A	201	211	anti-parallel
Strand 3	A	66	77	anti-parallel
Strand 4	A	144	150	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	43	first strand
Strand 2	A	201	211	anti-parallel
Strand 3	A	66	77	anti-parallel
Strand 4	A	163	164	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	59	first strand
Strand 2	A	173	179	anti-parallel
Strand 3	A	93	100	anti-parallel
Strand 4	A	103	109	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	192	193	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	237	first strand
Strand 2	A	413	427	anti-parallel
Strand 3	A	258	267	anti-parallel
Strand 4	A	369	370	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	258	267	anti-parallel
Strand 3	A	413	427	anti-parallel
Strand 4	A	430	433	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	252	first strand
Strand 2	A	377	383	anti-parallel
Strand 3	A	313	320	anti-parallel
Strand 4	A	323	324	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	252	first strand
Strand 2	A	377	383	anti-parallel
Strand 3	A	313	320	anti-parallel
Strand 4	A	329	330	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	388	first strand
Strand 2	A	403	405	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	43	first strand
Strand 2	B	201	211	anti-parallel
Strand 3	B	66	77	anti-parallel
Strand 4	B	144	150	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	43	first strand
Strand 2	B	201	211	anti-parallel
Strand 3	B	66	77	anti-parallel
Strand 4	B	163	164	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	59	first strand
Strand 2	B	173	179	anti-parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	103	109	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	192	193	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	237	first strand
Strand 2	B	413	427	anti-parallel
Strand 3	B	258	267	anti-parallel
Strand 4	B	369	370	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	258	267	anti-parallel
Strand 3	B	413	427	anti-parallel
Strand 4	B	430	433	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	252	first strand
Strand 2	B	377	383	anti-parallel
Strand 3	B	313	320	anti-parallel
Strand 4	B	323	324	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	252	first strand
Strand 2	B	377	383	anti-parallel
Strand 3	B	313	320	anti-parallel
Strand 4	B	329	330	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	388	first strand
Strand 2	B	403	405	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TIQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TIQ