Analysis of interatomic Contacts of Structural Units in PDB entry:
5TIR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TIR entry

There are 4 chains in PDB entry 5TIR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 209
B
 SER 2LEU 208
C
 SER 2LEU 208
D
 SER 2LEU 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5TIR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 33Right-handed alpha
Helix 2
AA2
A
33 55Right-handed alpha
Helix 3
AA3
A
57 84Right-handed alpha
Helix 4
AA4
A
90 97Right-handed 310
Helix 5
AA5
A
98 110Right-handed alpha
Helix 6
AA6
A
111 126Right-handed alpha
Helix 7
AA7
A
165 168Right-handed 310
Helix 8
AA8
A
169 174Right-handed alpha
Helix 9
AA9
A
176 185Right-handed alpha
Helix 10
AB1
A
186 188Right-handed 310
Helix 11
AB2
A
189 199Right-handed alpha
Helix 12
AB3
A
200 205Right-handed alpha
Helix 13
AB4
A
206 209Right-handed 310
Helix 14
AB5
B
23 33Right-handed alpha
Helix 15
AB6
B
33 55Right-handed alpha
Helix 16
AB7
B
57 64Right-handed alpha
Helix 17
AB8
B
64 84Right-handed alpha
Helix 18
AB9
B
90 97Right-handed 310
Helix 19
AC1
B
98 110Right-handed alpha
Helix 20
AC2
B
111 126Right-handed alpha
Helix 21
AC3
B
165 168Right-handed 310
Helix 22
AC4
B
169 174Right-handed alpha
Helix 23
AC5
B
176 185Right-handed alpha
Helix 24
AC6
B
186 188Right-handed 310
Helix 25
AC7
B
189 199Right-handed alpha
Helix 26
AC8
B
200 206Right-handed alpha
Helix 27
AC9
C
23 33Right-handed alpha
Helix 28
AD1
C
33 55Right-handed alpha
Helix 29
AD2
C
57 84Right-handed alpha
Helix 30
AD3
C
90 97Right-handed 310
Helix 31
AD4
C
98 110Right-handed alpha
Helix 32
AD5
C
111 126Right-handed alpha
Helix 33
AD6
C
165 168Right-handed 310
Helix 34
AD7
C
169 174Right-handed alpha
Helix 35
AD8
C
176 185Right-handed alpha
Helix 36
AD9
C
186 188Right-handed 310
Helix 37
AE1
C
189 199Right-handed alpha
Helix 38
AE2
C
200 206Right-handed alpha
Helix 39
AE3
D
23 33Right-handed alpha
Helix 40
AE4
D
33 55Right-handed alpha
Helix 41
AE5
D
57 84Right-handed alpha
Helix 42
AE6
D
90 97Right-handed 310
Helix 43
AE7
D
98 110Right-handed alpha
Helix 44
AE8
D
111 126Right-handed alpha
Helix 45
AE9
D
165 168Right-handed 310
Helix 46
AF1
D
169 174Right-handed alpha
Helix 47
AF2
D
176 185Right-handed alpha
Helix 48
AF3
D
186 188Right-handed 310
Helix 49
AF4
D
189 199Right-handed alpha
Helix 50
AF5
D
200 205Right-handed alpha
Helix 51
AF6
D
206 208Right-handed 310
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There are 4 sheets in PDB entry 5TIR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 147first strand
Strand 2
A
130 137anti-parallel
Strand 3
A
157 163anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 147first strand
Strand 2
B
130 137anti-parallel
Strand 3
B
157 163anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 147first strand
Strand 2
C
130 137anti-parallel
Strand 3
C
157 163anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 147first strand
Strand 2
D
130 137anti-parallel
Strand 3
D
157 163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il