Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TJ2 entry

There are 4 chains in PDB entry 5TJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	PRO 1406
B	LYS 1	PRO 1406
C	ILE 2	ALA 1403
D	LYS 1	GLY 1405

There are106 helices in PDB entry 5TJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	42	53	Right-handed alpha
Helix 3	AA3	A	66	73	Right-handed alpha
Helix 4	AA4	A	82	88	Right-handed alpha
Helix 5	AA5	A	90	97	Right-handed alpha
Helix 6	AA6	A	131	142	Right-handed alpha
Helix 7	AA7	A	153	164	Right-handed alpha
Helix 8	AA8	A	185	201	Right-handed alpha
Helix 9	AA9	A	209	219	Right-handed alpha
Helix 10	AB1	A	228	230	Right-handed 310
Helix 11	AB2	A	231	238	Right-handed alpha
Helix 12	AB3	A	272	283	Right-handed alpha
Helix 13	AB4	A	286	297	Right-handed alpha
Helix 14	AB5	A	304	312	Right-handed alpha
Helix 15	AB6	A	314	327	Right-handed alpha
Helix 16	AB7	A	334	353	Right-handed alpha
Helix 17	AB8	A	356	1225	Right-handed alpha
Helix 18	AB9	A	1248	1262	Right-handed alpha
Helix 19	AC1	A	1264	1279	Right-handed alpha
Helix 20	AC2	A	1281	1299	Right-handed alpha
Helix 21	AC3	A	1303	1307	Right-handed 310
Helix 22	AC4	A	1308	1314	Right-handed alpha
Helix 23	AC5	A	1322	1339	Right-handed alpha
Helix 24	AC6	A	1341	1353	Right-handed alpha
Helix 25	AC7	A	1354	1367	Right-handed alpha
Helix 26	AC8	A	1369	1373	Right-handed 310
Helix 27	AC9	A	1384	1405	Right-handed alpha
Helix 28	AD1	B	16	32	Right-handed alpha
Helix 29	AD2	B	42	53	Right-handed alpha
Helix 30	AD3	B	66	73	Right-handed alpha
Helix 31	AD4	B	82	88	Right-handed alpha
Helix 32	AD5	B	90	97	Right-handed alpha
Helix 33	AD6	B	131	143	Right-handed alpha
Helix 34	AD7	B	153	164	Right-handed alpha
Helix 35	AD8	B	185	201	Right-handed alpha
Helix 36	AD9	B	209	219	Right-handed alpha
Helix 37	AE1	B	228	230	Right-handed 310
Helix 38	AE2	B	231	238	Right-handed alpha
Helix 39	AE3	B	272	283	Right-handed alpha
Helix 40	AE4	B	286	297	Right-handed alpha
Helix 41	AE5	B	304	312	Right-handed alpha
Helix 42	AE6	B	314	327	Right-handed alpha
Helix 43	AE7	B	334	353	Right-handed alpha
Helix 44	AE8	B	356	1225	Right-handed alpha
Helix 45	AE9	B	1248	1262	Right-handed alpha
Helix 46	AF1	B	1264	1279	Right-handed alpha
Helix 47	AF2	B	1281	1299	Right-handed alpha
Helix 48	AF3	B	1303	1307	Right-handed 310
Helix 49	AF4	B	1308	1314	Right-handed alpha
Helix 50	AF5	B	1322	1339	Right-handed alpha
Helix 51	AF6	B	1341	1352	Right-handed alpha
Helix 52	AF7	B	1354	1367	Right-handed alpha
Helix 53	AF8	B	1369	1375	Right-handed alpha
Helix 54	AF9	B	1384	1405	Right-handed alpha
Helix 55	AG1	C	16	32	Right-handed alpha
Helix 56	AG2	C	42	53	Right-handed alpha
Helix 57	AG3	C	66	73	Right-handed alpha
Helix 58	AG4	C	82	88	Right-handed alpha
Helix 59	AG5	C	90	97	Right-handed alpha
Helix 60	AG6	C	131	143	Right-handed alpha
Helix 61	AG7	C	153	164	Right-handed alpha
Helix 62	AG8	C	185	201	Right-handed alpha
Helix 63	AG9	C	209	219	Right-handed alpha
Helix 64	AH1	C	228	230	Right-handed 310
Helix 65	AH2	C	231	238	Right-handed alpha
Helix 66	AH3	C	272	283	Right-handed alpha
Helix 67	AH4	C	286	297	Right-handed alpha
Helix 68	AH5	C	304	312	Right-handed alpha
Helix 69	AH6	C	314	327	Right-handed alpha
Helix 70	AH7	C	334	353	Right-handed alpha
Helix 71	AH8	C	356	1225	Right-handed alpha
Helix 72	AH9	C	1249	1262	Right-handed alpha
Helix 73	AI1	C	1264	1279	Right-handed alpha
Helix 74	AI2	C	1281	1299	Right-handed alpha
Helix 75	AI3	C	1303	1307	Right-handed 310
Helix 76	AI4	C	1308	1314	Right-handed alpha
Helix 77	AI5	C	1322	1339	Right-handed alpha
Helix 78	AI6	C	1341	1352	Right-handed alpha
Helix 79	AI7	C	1354	1366	Right-handed alpha
Helix 80	AI8	C	1384	1403	Right-handed alpha
Helix 81	AI9	D	16	32	Right-handed alpha
Helix 82	AJ1	D	42	53	Right-handed alpha
Helix 83	AJ2	D	66	73	Right-handed alpha
Helix 84	AJ3	D	82	88	Right-handed alpha
Helix 85	AJ4	D	90	97	Right-handed alpha
Helix 86	AJ5	D	131	142	Right-handed alpha
Helix 87	AJ6	D	153	164	Right-handed alpha
Helix 88	AJ7	D	185	201	Right-handed alpha
Helix 89	AJ8	D	209	219	Right-handed alpha
Helix 90	AJ9	D	228	230	Right-handed 310
Helix 91	AK1	D	231	238	Right-handed alpha
Helix 92	AK2	D	272	283	Right-handed alpha
Helix 93	AK3	D	286	297	Right-handed alpha
Helix 94	AK4	D	304	312	Right-handed alpha
Helix 95	AK5	D	314	327	Right-handed alpha
Helix 96	AK6	D	334	353	Right-handed alpha
Helix 97	AK7	D	356	1225	Right-handed alpha
Helix 98	AK8	D	1251	1262	Right-handed alpha
Helix 99	AK9	D	1264	1279	Right-handed alpha
Helix 100	AL1	D	1281	1299	Right-handed alpha
Helix 101	AL2	D	1303	1307	Right-handed 310
Helix 102	AL3	D	1308	1314	Right-handed alpha
Helix 103	AL4	D	1322	1339	Right-handed alpha
Helix 104	AL5	D	1341	1353	Right-handed alpha
Helix 105	AL6	D	1354	1366	Right-handed alpha
Helix 106	AL7	D	1384	1405	Right-handed alpha

There are 24 sheets in PDB entry 5TJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	6	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	106	111	anti-parallel
Strand 6	A	301	302	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	6	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	328	329	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	175	182	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	253	254	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	6	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	106	111	anti-parallel
Strand 6	B	301	302	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	6	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	328	329	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	222	227	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	242	245	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	172	first strand
Strand 2	B	175	182	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	253	254	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	6	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	266	anti-parallel
Strand 5	C	106	111	anti-parallel
Strand 6	C	301	302	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	6	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	266	anti-parallel
Strand 5	C	328	329	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	102	103	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	222	227	parallel
Strand 3	C	114	118	anti-parallel
Strand 4	C	242	245	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	172	first strand
Strand 2	C	175	182	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	253	254	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	6	10	parallel
Strand 3	D	59	63	parallel
Strand 4	D	258	266	anti-parallel
Strand 5	D	106	111	anti-parallel
Strand 6	D	301	302	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	6	10	parallel
Strand 3	D	59	63	parallel
Strand 4	D	258	266	anti-parallel
Strand 5	D	328	329	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	102	103	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	222	227	parallel
Strand 3	D	114	118	anti-parallel
Strand 4	D	242	245	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	172	first strand
Strand 2	D	175	182	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	253	254	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJ2