Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TJ7 entry

There are 4 chains in PDB entry 5TJ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 335	GLU 865
B	GLY 335	GLU 865
C	GLY 335	GLU 865
D	GLY 335	GLU 865

There are 86 helices in PDB entry 5TJ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	362	378	Right-handed alpha
Helix 2	AA2	A	382	387	Right-handed alpha
Helix 3	AA3	A	494	509	Right-handed alpha
Helix 4	AA4	A	523	534	Right-handed alpha
Helix 5	AA5	A	536	542	Right-handed 310
Helix 6	AA6	A	556	571	Right-handed alpha
Helix 7	AA7	A	572	577	Right-handed 310
Helix 8	AA8	A	593	598	Right-handed 310
Helix 9	AA9	A	600	618	Right-handed alpha
Helix 10	AB1	A	627	635	Right-handed alpha
Helix 11	AB2	A	641	645	Right-handed 310
Helix 12	AB3	A	648	661	Right-handed alpha
Helix 13	AB4	A	699	715	Right-handed alpha
Helix 14	AB5	A	717	730	Right-handed alpha
Helix 15	AB6	A	733	738	Right-handed 310
Helix 16	AB7	A	741	751	Right-handed alpha
Helix 17	AB8	A	756	763	Right-handed alpha
Helix 18	AB9	A	773	786	Right-handed alpha
Helix 19	AC1	A	787	800	Right-handed alpha
Helix 20	AC2	A	807	811	Right-handed 310
Helix 21	AC3	A	849	863	Right-handed alpha
Helix 22	AC4	B	362	378	Right-handed alpha
Helix 23	AC5	B	378	387	Right-handed alpha
Helix 24	AC6	B	391	395	Right-handed 310
Helix 25	AC7	B	494	510	Right-handed alpha
Helix 26	AC8	B	523	535	Right-handed alpha
Helix 27	AC9	B	536	540	Right-handed 310
Helix 28	AD1	B	555	571	Right-handed alpha
Helix 29	AD2	B	572	577	Right-handed 310
Helix 30	AD3	B	594	598	Right-handed 310
Helix 31	AD4	B	600	619	Right-handed alpha
Helix 32	AD5	B	627	636	Right-handed alpha
Helix 33	AD6	B	642	647	Right-handed 310
Helix 34	AD7	B	648	661	Right-handed alpha
Helix 35	AD8	B	700	715	Right-handed alpha
Helix 36	AD9	B	717	730	Right-handed alpha
Helix 37	AE1	B	735	739	Right-handed 310
Helix 38	AE2	B	741	751	Right-handed alpha
Helix 39	AE3	B	756	763	Right-handed alpha
Helix 40	AE4	B	773	786	Right-handed alpha
Helix 41	AE5	B	787	800	Right-handed alpha
Helix 42	AE6	B	807	811	Right-handed 310
Helix 43	AE7	B	849	863	Right-handed alpha
Helix 44	AE8	C	362	378	Right-handed alpha
Helix 45	AE9	C	382	388	Right-handed alpha
Helix 46	AF1	C	494	508	Right-handed alpha
Helix 47	AF2	C	523	535	Right-handed alpha
Helix 48	AF3	C	536	542	Right-handed 310
Helix 49	AF4	C	557	571	Right-handed alpha
Helix 50	AF5	C	572	577	Right-handed 310
Helix 51	AF6	C	594	598	Right-handed 310
Helix 52	AF7	C	600	618	Right-handed alpha
Helix 53	AF8	C	627	635	Right-handed alpha
Helix 54	AF9	C	640	648	Right-handed alpha
Helix 55	AG1	C	648	661	Right-handed alpha
Helix 56	AG2	C	700	715	Right-handed alpha
Helix 57	AG3	C	717	732	Right-handed alpha
Helix 58	AG4	C	733	737	Right-handed 310
Helix 59	AG5	C	741	751	Right-handed alpha
Helix 60	AG6	C	756	763	Right-handed alpha
Helix 61	AG7	C	773	785	Right-handed alpha
Helix 62	AG8	C	787	800	Right-handed alpha
Helix 63	AG9	C	849	863	Right-handed alpha
Helix 64	AH1	D	362	378	Right-handed alpha
Helix 65	AH2	D	379	381	Right-handed 310
Helix 66	AH3	D	382	388	Right-handed alpha
Helix 67	AH4	D	494	508	Right-handed alpha
Helix 68	AH5	D	520	522	Right-handed 310
Helix 69	AH6	D	523	535	Right-handed alpha
Helix 70	AH7	D	536	542	Right-handed 310
Helix 71	AH8	D	555	571	Right-handed alpha
Helix 72	AH9	D	572	577	Right-handed 310
Helix 73	AI1	D	594	598	Right-handed 310
Helix 74	AI2	D	600	619	Right-handed alpha
Helix 75	AI3	D	627	635	Right-handed alpha
Helix 76	AI4	D	641	647	Right-handed 310
Helix 77	AI5	D	648	661	Right-handed alpha
Helix 78	AI6	D	700	715	Right-handed alpha
Helix 79	AI7	D	717	732	Right-handed alpha
Helix 80	AI8	D	735	740	Right-handed 310
Helix 81	AI9	D	741	751	Right-handed alpha
Helix 82	AJ1	D	756	763	Right-handed alpha
Helix 83	AJ2	D	773	785	Right-handed alpha
Helix 84	AJ3	D	787	800	Right-handed alpha
Helix 85	AJ4	D	808	812	Right-handed 310
Helix 86	AJ5	D	849	863	Right-handed alpha

There are 22 sheets in PDB entry 5TJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	350	first strand
Strand 2	A	355	357	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	519	first strand
Strand 2	A	543	548	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	581	first strand
Strand 2	A	589	591	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	678	first strand
Strand 2	A	681	686	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	764	767	first strand
Strand 2	A	821	824	parallel
Strand 3	A	841	843	parallel
Strand 4	A	834	836	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	813	814	first strand
Strand 2	A	817	818	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	339	first strand
Strand 2	B	347	350	anti-parallel
Strand 3	B	355	357	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	519	first strand
Strand 2	B	542	548	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	580	first strand
Strand 2	B	590	591	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	676	first strand
Strand 2	B	683	686	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	765	767	first strand
Strand 2	B	822	824	parallel
Strand 3	B	841	843	parallel
Strand 4	B	834	836	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	813	814	first strand
Strand 2	B	817	818	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	347	350	anti-parallel
Strand 3	C	355	357	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	519	first strand
Strand 2	C	543	548	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	581	first strand
Strand 2	C	589	591	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	682	686	first strand
Strand 2	C	671	677	anti-parallel
Strand 3	C	692	695	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	767	first strand
Strand 2	C	822	824	parallel
Strand 3	C	841	843	parallel
Strand 4	C	834	835	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	813	814	first strand
Strand 2	C	817	818	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	340	first strand
Strand 2	D	346	349	anti-parallel
Strand 3	D	356	357	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	519	first strand
Strand 2	D	543	548	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	579	581	first strand
Strand 2	D	589	591	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	765	767	first strand
Strand 2	D	822	824	parallel
Strand 3	D	841	843	parallel
Strand 4	D	834	836	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TJ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJ7