Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TJE entry

There are 10 chains in PDB entry 5TJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2PRO 276
B
 GLN 2MET 99
C
 HIS 3PRO 276
D
 GLN 2MET 99
G
 GLN 9ILE 120
H
 ALA 1ALA 236
E
 GLN 1ILE 120
F
 ALA 1ASP 237
I
 LYS 1MET 9
J
 LYS 1MET 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5TJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 53Right-handed 310
Helix 2
AA2
A
56 86Right-handed alpha
Helix 3
AA3
A
137 150Right-handed alpha
Helix 4
AA4
A
151 161Right-handed alpha
Helix 5
AA5
A
162 175Right-handed alpha
Helix 6
AA6
C
49 53Right-handed 310
Helix 7
AA7
C
56 86Right-handed alpha
Helix 8
AA8
C
139 150Right-handed alpha
Helix 9
AA9
C
151 161Right-handed alpha
Helix 10
AB1
C
162 175Right-handed alpha
Helix 11
AB2
G
88 92Right-handed 310
Helix 12
AB3
H
130 136Right-handed alpha
Helix 13
AB4
H
191 196Right-handed alpha
Helix 14
AB5
E
88 92Right-handed 310
Helix 15
AB6
F
128 134Right-handed alpha
Helix 16
AB7
F
190 195Right-handed alpha
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There are 23 sheets in PDB entry 5TJE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
3 12anti-parallel
Strand 4
A
94 103anti-parallel
Strand 5
A
109 118anti-parallel
Strand 6
A
122 126anti-parallel
Strand 7
A
133 135anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 191first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
257 262anti-parallel
Strand 3
A
270 272anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
20 30anti-parallel
Strand 3
B
62 71anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
78 83anti-parallel
Strand 3
B
91 94anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 37first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
4 12anti-parallel
Strand 4
C
94 103anti-parallel
Strand 5
C
109 118anti-parallel
Strand 6
C
122 126anti-parallel
Strand 7
C
133 135anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 191first strand
Strand 2
C
198 208anti-parallel
Strand 3
C
241 250anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 219first strand
Strand 2
C
257 262anti-parallel
Strand 3
C
270 272anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 11first strand
Strand 2
D
20 30anti-parallel
Strand 3
D
62 71anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 41first strand
Strand 2
D
78 83anti-parallel
Strand 3
D
91 94anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
11 14first strand
Strand 2
G
26 32anti-parallel
Strand 3
G
79 84anti-parallel
Strand 4
G
69 74anti-parallel
Strand 5
G
63 66anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
17 21first strand
Strand 2
G
112 117parallel
Strand 3
G
93 97anti-parallel
Strand 4
G
39 45anti-parallel
Strand 5
G
52 58anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
2 5first strand
Strand 2
H
17 23anti-parallel
Strand 3
H
71 76anti-parallel
Strand 4
H
63 65anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
8 12first strand
Strand 2
H
106 111parallel
Strand 3
H
85 92anti-parallel
Strand 4
H
29 35anti-parallel
Strand 5
H
42 47anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
90 92first strand
Strand 2
H
100 102anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
121 125first strand
Strand 2
H
138 147anti-parallel
Strand 3
H
181 189anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
152 155first strand
Strand 2
H
200 207anti-parallel
Strand 3
H
226 233anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 14first strand
Strand 2
E
26 32anti-parallel
Strand 3
E
79 84anti-parallel
Strand 4
E
69 74anti-parallel
Strand 5
E
63 66anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
17 21first strand
Strand 2
E
112 117parallel
Strand 3
E
93 97anti-parallel
Strand 4
E
39 45anti-parallel
Strand 5
E
52 58anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 5first strand
Strand 2
F
17 23anti-parallel
Strand 3
F
71 76anti-parallel
Strand 4
F
63 65anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 12first strand
Strand 2
F
106 111parallel
Strand 3
F
85 92anti-parallel
Strand 4
F
29 35anti-parallel
Strand 5
F
42 47anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
121 125first strand
Strand 2
F
140 145anti-parallel
Strand 3
F
182 187anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
204 207first strand
Strand 2
F
226 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il