Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TJF entry

There are 3 chains in PDB entry 5TJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 161
B
 MET 1GLY 70
B
 MET 72SER 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5TJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
19 46Right-handed alpha
Helix 3
AA3
A
46 62Right-handed alpha
Helix 4
AA4
A
62 67Right-handed alpha
Helix 5
AA5
A
74 99Right-handed alpha
Helix 6
AA6
A
101 109Right-handed alpha
Helix 7
AA7
A
111 120Right-handed alpha
Helix 8
AA8
A
122 141Right-handed alpha
Helix 9
AA9
A
145 161Right-handed alpha
Helix 10
AB1
B
3 12Right-handed alpha
Helix 11
AB2
B
20 60Right-handed alpha
Helix 12
AB3
B
63 67Right-handed 310
Helix 13
AB4
B
74 99Right-handed alpha
Helix 14
AB5
B
101 108Right-handed alpha
Helix 15
AB6
B
112 120Right-handed alpha
Helix 16
AB7
B
123 142Right-handed alpha
Helix 17
AB8
B
143 161Right-handed alpha
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There are no sheets in PDB entry 5TJF
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il