Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TJI entry

There is 1 chain in PDB entry 5TJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 15LYS 1065
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5TJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 44Right-handed alpha
Helix 2
AA2
A
82 92Right-handed alpha
Helix 3
AA3
A
96 124Right-handed alpha
Helix 4
AA4
A
136 160Right-handed alpha
Helix 5
AA5
A
163 168Right-handed alpha
Helix 6
AA6
A
169 189Right-handed alpha
Helix 7
AA7
A
195 204Right-handed 310
Helix 8
AA8
A
205 214Right-handed alpha
Helix 9
AA9
A
218 249Right-handed alpha
Helix 10
AB1
A
263 275Right-handed alpha
Helix 11
AB2
A
286 317Right-handed alpha
Helix 12
AB3
A
341 353Right-handed alpha
Helix 13
AB4
A
373 383Right-handed alpha
Helix 14
AB5
A
396 404Right-handed alpha
Helix 15
AB6
A
421 440Right-handed alpha
Helix 16
AB7
A
454 460Right-handed alpha
Helix 17
AB8
A
465 469Right-handed 310
Helix 18
AB9
A
475 489Right-handed alpha
Helix 19
AC1
A
491 501Right-handed alpha
Helix 20
AC2
A
512 524Right-handed alpha
Helix 21
AC3
A
532 536Right-handed 310
Helix 22
AC4
A
539 550Right-handed alpha
Helix 23
AC5
A
592 601Right-handed alpha
Helix 24
AC6
A
612 616Right-handed 310
Helix 25
AC7
A
721 726Right-handed alpha
Helix 26
AC8
A
728 735Right-handed alpha
Helix 27
AC9
A
756 764Right-handed alpha
Helix 28
AD1
A
781 793Right-handed alpha
Helix 29
AD2
A
807 815Right-handed alpha
Helix 30
AD3
A
839 852Right-handed alpha
Helix 31
AD4
A
895 901Right-handed 310
Helix 32
AD5
A
912 915Right-handed 310
Helix 33
AD6
A
916 922Right-handed alpha
Helix 34
AD7
A
928 940Right-handed alpha
Helix 35
AD8
A
943 952Right-handed alpha
Helix 36
AD9
A
956 966Right-handed alpha
Helix 37
AE1
A
975 980Right-handed alpha
Helix 38
AE2
A
981 983Right-handed 310
Helix 39
AE3
A
997 1002Right-handed alpha
Helix 40
AE4
A
1005 1016Right-handed alpha
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There are 4 sheets in PDB entry 5TJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 391first strand
Strand 2
A
363 368parallel
Strand 3
A
333 338parallel
Strand 4
A
410 414parallel
Strand 5
A
444 449parallel
Strand 6
A
471 474parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 530first strand
Strand 2
A
585 590anti-parallel
Strand 3
A
554 560anti-parallel
Strand 4
A
569 572anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
801 802first strand
Strand 2
A
776 780parallel
Strand 3
A
741 746parallel
Strand 4
A
821 826parallel
Strand 5
A
888 892parallel
Strand 6
A
924 926parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
986 991first strand
Strand 2
A
1058 1063anti-parallel
Strand 3
A
1020 1024anti-parallel
Strand 4
A
1044 1045anti-parallel
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