Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TJJ entry

There are 2 chains in PDB entry 5TJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLN 254
B
 TYR 3GLY 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5TJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 19Right-handed alpha
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
28 36Right-handed alpha
Helix 4
AA4
A
38 52Right-handed alpha
Helix 5
AA5
A
69 81Right-handed alpha
Helix 6
AA6
A
82 99Right-handed alpha
Helix 7
AA7
A
140 149Right-handed alpha
Helix 8
AA8
A
152 162Right-handed alpha
Helix 9
AA9
A
174 189Right-handed alpha
Helix 10
AB1
A
226 228Right-handed 310
Helix 11
AB2
A
229 251Right-handed alpha
Helix 12
AB3
B
5 20Right-handed alpha
Helix 13
AB4
B
21 24Right-handed 310
Helix 14
AB5
B
27 36Right-handed alpha
Helix 15
AB6
B
38 52Right-handed alpha
Helix 16
AB7
B
69 80Right-handed alpha
Helix 17
AB8
B
81 99Right-handed alpha
Helix 18
AB9
B
140 149Right-handed alpha
Helix 19
AC1
B
152 163Right-handed alpha
Helix 20
AC2
B
174 189Right-handed alpha
Helix 21
AC3
B
229 251Right-handed alpha
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There are 4 sheets in PDB entry 5TJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
55 58anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
112 119anti-parallel
Strand 3
A
101 107anti-parallel
Strand 4
A
215 224anti-parallel
Strand 5
A
201 209anti-parallel
Strand 6
A
191 194anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
64 66anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 137first strand
Strand 2
B
112 119anti-parallel
Strand 3
B
101 107anti-parallel
Strand 4
B
215 224anti-parallel
Strand 5
B
201 209anti-parallel
Strand 6
B
191 194anti-parallel
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