Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TJR entry

There are 6 chains in PDB entry 5TJR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 494
B	MET 1	PHE 494
C	THR 2	PHE 494
D	THR 2	PHE 494
E	THR 2	PHE 494
F	MET 1	PHE 494

There are103 helices in PDB entry 5TJR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	58	Right-handed alpha
Helix 2	AA2	A	60	78	Right-handed alpha
Helix 3	AA3	A	78	90	Right-handed alpha
Helix 4	AA4	A	93	113	Right-handed alpha
Helix 5	AA5	A	113	118	Right-handed alpha
Helix 6	AA6	A	152	165	Right-handed alpha
Helix 7	AA7	A	177	192	Right-handed alpha
Helix 8	AA8	A	204	214	Right-handed alpha
Helix 9	AA9	A	225	239	Right-handed alpha
Helix 10	AB1	A	260	273	Right-handed alpha
Helix 11	AB2	A	290	306	Right-handed alpha
Helix 12	AB3	A	329	342	Right-handed alpha
Helix 13	AB4	A	376	381	Right-handed alpha
Helix 14	AB5	A	395	405	Right-handed alpha
Helix 15	AB6	A	418	429	Right-handed alpha
Helix 16	AB7	A	459	471	Right-handed alpha
Helix 17	AB8	A	488	492	Right-handed 310
Helix 18	AB9	B	38	58	Right-handed alpha
Helix 19	AC1	B	60	78	Right-handed alpha
Helix 20	AC2	B	78	90	Right-handed alpha
Helix 21	AC3	B	93	113	Right-handed alpha
Helix 22	AC4	B	113	118	Right-handed alpha
Helix 23	AC5	B	152	165	Right-handed alpha
Helix 24	AC6	B	177	192	Right-handed alpha
Helix 25	AC7	B	204	214	Right-handed alpha
Helix 26	AC8	B	225	239	Right-handed alpha
Helix 27	AC9	B	260	273	Right-handed alpha
Helix 28	AD1	B	290	308	Right-handed alpha
Helix 29	AD2	B	327	342	Right-handed alpha
Helix 30	AD3	B	376	381	Right-handed alpha
Helix 31	AD4	B	395	405	Right-handed alpha
Helix 32	AD5	B	418	429	Right-handed alpha
Helix 33	AD6	B	459	471	Right-handed alpha
Helix 34	AD7	B	488	492	Right-handed 310
Helix 35	AD8	C	38	58	Right-handed alpha
Helix 36	AD9	C	60	78	Right-handed alpha
Helix 37	AE1	C	78	90	Right-handed alpha
Helix 38	AE2	C	93	113	Right-handed alpha
Helix 39	AE3	C	113	118	Right-handed alpha
Helix 40	AE4	C	152	165	Right-handed alpha
Helix 41	AE5	C	177	192	Right-handed alpha
Helix 42	AE6	C	204	214	Right-handed alpha
Helix 43	AE7	C	225	239	Right-handed alpha
Helix 44	AE8	C	260	271	Right-handed alpha
Helix 45	AE9	C	290	305	Right-handed alpha
Helix 46	AF1	C	329	342	Right-handed alpha
Helix 47	AF2	C	376	381	Right-handed alpha
Helix 48	AF3	C	395	405	Right-handed alpha
Helix 49	AF4	C	418	429	Right-handed alpha
Helix 50	AF5	C	459	471	Right-handed alpha
Helix 51	AF6	C	488	492	Right-handed 310
Helix 52	AF7	D	38	58	Right-handed alpha
Helix 53	AF8	D	60	78	Right-handed alpha
Helix 54	AF9	D	78	90	Right-handed alpha
Helix 55	AG1	D	93	113	Right-handed alpha
Helix 56	AG2	D	113	118	Right-handed alpha
Helix 57	AG3	D	152	165	Right-handed alpha
Helix 58	AG4	D	177	192	Right-handed alpha
Helix 59	AG5	D	204	214	Right-handed alpha
Helix 60	AG6	D	225	239	Right-handed alpha
Helix 61	AG7	D	260	274	Right-handed alpha
Helix 62	AG8	D	290	307	Right-handed alpha
Helix 63	AG9	D	327	342	Right-handed alpha
Helix 64	AH1	D	376	381	Right-handed alpha
Helix 65	AH2	D	395	405	Right-handed alpha
Helix 66	AH3	D	418	429	Right-handed alpha
Helix 67	AH4	D	459	471	Right-handed alpha
Helix 68	AH5	D	488	492	Right-handed 310
Helix 69	AH6	E	38	58	Right-handed alpha
Helix 70	AH7	E	60	78	Right-handed alpha
Helix 71	AH8	E	78	90	Right-handed alpha
Helix 72	AH9	E	93	113	Right-handed alpha
Helix 73	AI1	E	113	118	Right-handed alpha
Helix 74	AI2	E	152	165	Right-handed alpha
Helix 75	AI3	E	177	192	Right-handed alpha
Helix 76	AI4	E	204	214	Right-handed alpha
Helix 77	AI5	E	225	239	Right-handed alpha
Helix 78	AI6	E	260	274	Right-handed alpha
Helix 79	AI7	E	290	305	Right-handed alpha
Helix 80	AI8	E	330	342	Right-handed alpha
Helix 81	AI9	E	376	381	Right-handed alpha
Helix 82	AJ1	E	395	405	Right-handed alpha
Helix 83	AJ2	E	418	429	Right-handed alpha
Helix 84	AJ3	E	459	471	Right-handed alpha
Helix 85	AJ4	E	488	492	Right-handed 310
Helix 86	AJ5	F	25	28	Right-handed 310
Helix 87	AJ6	F	38	58	Right-handed alpha
Helix 88	AJ7	F	60	78	Right-handed alpha
Helix 89	AJ8	F	78	90	Right-handed alpha
Helix 90	AJ9	F	93	113	Right-handed alpha
Helix 91	AK1	F	113	118	Right-handed alpha
Helix 92	AK2	F	152	165	Right-handed alpha
Helix 93	AK3	F	177	192	Right-handed alpha
Helix 94	AK4	F	204	214	Right-handed alpha
Helix 95	AK5	F	225	239	Right-handed alpha
Helix 96	AK6	F	260	273	Right-handed alpha
Helix 97	AK7	F	290	305	Right-handed alpha
Helix 98	AK8	F	330	342	Right-handed alpha
Helix 99	AK9	F	376	381	Right-handed alpha
Helix 100	AL1	F	395	405	Right-handed alpha
Helix 101	AL2	F	418	429	Right-handed alpha
Helix 102	AL3	F	459	471	Right-handed alpha
Helix 103	AL4	F	488	492	Right-handed 310

There are 26 sheets in PDB entry 5TJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	32	35	parallel
Strand 3	A	19	22	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	11	13	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	127	first strand
Strand 2	A	130	138	anti-parallel
Strand 3	A	472	479	anti-parallel
Strand 4	F	433	436	parallel
Strand 5	F	412	415	parallel
Strand 6	F	252	255	parallel
Strand 7	F	285	289	parallel
Strand 8	F	387	393	parallel
Strand 9	F	367	370	parallel
Strand 10	F	345	348	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	168	172	parallel
Strand 3	A	141	145	parallel
Strand 4	A	217	224	parallel
Strand 5	A	242	248	parallel
Strand 6	A	446	449	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	348	first strand
Strand 2	A	367	370	anti-parallel
Strand 3	A	387	393	parallel
Strand 4	A	285	289	parallel
Strand 5	A	252	255	parallel
Strand 6	A	412	415	parallel
Strand 7	A	433	436	parallel
Strand 8	F	472	479	parallel
Strand 9	F	130	138	anti-parallel
Strand 10	F	122	127	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	11	13	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	23	first strand
Strand 2	B	30	35	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	127	first strand
Strand 2	B	130	138	anti-parallel
Strand 3	B	472	479	anti-parallel
Strand 4	C	433	436	parallel
Strand 5	C	412	415	parallel
Strand 6	C	252	255	parallel
Strand 7	C	285	289	parallel
Strand 8	C	387	393	parallel
Strand 9	C	367	370	parallel
Strand 10	C	345	348	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	168	172	parallel
Strand 3	B	141	145	parallel
Strand 4	B	217	224	parallel
Strand 5	B	242	248	parallel
Strand 6	B	446	449	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	348	first strand
Strand 2	B	367	370	anti-parallel
Strand 3	B	387	393	parallel
Strand 4	B	285	289	parallel
Strand 5	B	252	255	parallel
Strand 6	B	412	415	parallel
Strand 7	B	433	436	parallel
Strand 8	C	472	479	parallel
Strand 9	C	130	138	anti-parallel
Strand 10	C	122	127	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	352	first strand
Strand 2	B	363	364	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	11	13	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	23	first strand
Strand 2	C	30	35	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	200	first strand
Strand 2	C	168	172	parallel
Strand 3	C	141	145	parallel
Strand 4	C	217	224	parallel
Strand 5	C	242	248	parallel
Strand 6	C	446	449	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	11	13	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	D	33	35	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	127	first strand
Strand 2	D	130	138	anti-parallel
Strand 3	D	472	479	anti-parallel
Strand 4	E	433	436	parallel
Strand 5	E	412	415	parallel
Strand 6	E	252	255	parallel
Strand 7	E	285	289	parallel
Strand 8	E	387	393	parallel
Strand 9	E	367	370	parallel
Strand 10	E	345	348	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	200	first strand
Strand 2	D	168	172	parallel
Strand 3	D	141	145	parallel
Strand 4	D	217	224	parallel
Strand 5	D	242	248	parallel
Strand 6	D	446	449	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	348	first strand
Strand 2	D	367	370	anti-parallel
Strand 3	D	387	393	parallel
Strand 4	D	285	289	parallel
Strand 5	D	252	255	parallel
Strand 6	D	412	415	parallel
Strand 7	D	433	436	parallel
Strand 8	E	472	479	parallel
Strand 9	E	130	138	anti-parallel
Strand 10	E	122	127	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	356	first strand
Strand 2	D	359	364	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	11	13	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	22	first strand
Strand 2	E	32	35	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	200	first strand
Strand 2	E	168	172	parallel
Strand 3	E	141	145	parallel
Strand 4	E	217	224	parallel
Strand 5	E	242	248	parallel
Strand 6	E	446	449	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	8	first strand
Strand 2	F	11	13	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	23	first strand
Strand 2	F	30	35	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	200	first strand
Strand 2	F	168	172	parallel
Strand 3	F	141	145	parallel
Strand 4	F	217	224	parallel
Strand 5	F	242	248	parallel
Strand 6	F	446	448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TJR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJR