Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TJT entry

There are 6 chains in PDB entry 5TJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 164	TYR 455
B	SER 164	TYR 455
C	SER 164	TYR 455
D	SER 164	TYR 455
E	SER 164	TYR 455
F	SER 164	TYR 455

There are 41 helices in PDB entry 5TJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	170	174	Right-handed 310
Helix 2	AA2	A	256	261	Right-handed alpha
Helix 3	AA3	A	266	289	Right-handed alpha
Helix 4	AA4	A	313	317	Right-handed 310
Helix 5	AA5	A	322	336	Right-handed alpha
Helix 6	AA6	A	348	356	Right-handed alpha
Helix 7	AA7	A	372	380	Right-handed alpha
Helix 8	AA8	B	256	261	Right-handed alpha
Helix 9	AA9	B	267	289	Right-handed alpha
Helix 10	AB1	B	313	317	Right-handed 310
Helix 11	AB2	B	322	335	Right-handed alpha
Helix 12	AB3	B	348	352	Right-handed alpha
Helix 13	AB4	B	372	380	Right-handed alpha
Helix 14	AB5	C	256	261	Right-handed alpha
Helix 15	AB6	C	266	289	Right-handed alpha
Helix 16	AB7	C	313	317	Right-handed 310
Helix 17	AB8	C	322	338	Right-handed alpha
Helix 18	AB9	C	348	352	Right-handed alpha
Helix 19	AC1	C	372	380	Right-handed alpha
Helix 20	AC2	C	381	385	Right-handed 310
Helix 21	AC3	D	170	174	Right-handed 310
Helix 22	AC4	D	256	261	Right-handed alpha
Helix 23	AC5	D	266	289	Right-handed alpha
Helix 24	AC6	D	298	303	Right-handed alpha
Helix 25	AC7	D	313	317	Right-handed 310
Helix 26	AC8	D	322	335	Right-handed alpha
Helix 27	AC9	D	348	356	Right-handed alpha
Helix 28	AD1	D	372	380	Right-handed alpha
Helix 29	AD2	E	170	174	Right-handed 310
Helix 30	AD3	E	256	261	Right-handed alpha
Helix 31	AD4	E	267	289	Right-handed alpha
Helix 32	AD5	E	322	335	Right-handed alpha
Helix 33	AD6	E	348	356	Right-handed alpha
Helix 34	AD7	E	372	380	Right-handed alpha
Helix 35	AD8	F	256	261	Right-handed alpha
Helix 36	AD9	F	266	289	Right-handed alpha
Helix 37	AE1	F	298	304	Right-handed alpha
Helix 38	AE2	F	322	336	Right-handed alpha
Helix 39	AE3	F	348	356	Right-handed alpha
Helix 40	AE4	F	372	380	Right-handed alpha
Helix 41	AE5	F	381	385	Right-handed 310

There are 23 sheets in PDB entry 5TJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	413	415	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	209	first strand
Strand 2	A	241	245	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	413	424	parallel
Strand 3	B	432	440	anti-parallel
Strand 4	B	247	255	anti-parallel
Strand 5	A	219	220	anti-parallel
Strand 6	B	432	440	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	255	first strand
Strand 2	A	432	440	anti-parallel
Strand 3	A	417	424	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	385	390	anti-parallel
Strand 3	A	343	347	parallel
Strand 4	A	402	405	anti-parallel
Strand 5	A	451	453	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	209	first strand
Strand 2	B	241	245	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	385	390	anti-parallel
Strand 3	B	343	347	parallel
Strand 4	B	403	405	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	200	first strand
Strand 2	C	412	415	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	208	first strand
Strand 2	C	242	245	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	249	first strand
Strand 2	C	432	440	anti-parallel
Strand 3	C	252	255	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	249	first strand
Strand 2	C	432	440	anti-parallel
Strand 3	C	417	424	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	390	first strand
Strand 2	C	343	347	parallel
Strand 3	C	403	405	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	200	first strand
Strand 2	D	413	415	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	207	first strand
Strand 2	D	243	244	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	255	first strand
Strand 2	D	432	440	anti-parallel
Strand 3	D	417	424	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	382	first strand
Strand 2	D	385	390	anti-parallel
Strand 3	D	343	347	parallel
Strand 4	D	402	405	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	200	first strand
Strand 2	E	413	424	parallel
Strand 3	E	432	440	anti-parallel
Strand 4	E	247	255	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	206	208	first strand
Strand 2	E	242	244	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	387	390	first strand
Strand 2	E	343	347	parallel
Strand 3	E	402	405	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	200	first strand
Strand 2	F	412	424	parallel
Strand 3	F	432	440	anti-parallel
Strand 4	F	247	255	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	209	first strand
Strand 2	F	241	244	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	344	347	first strand
Strand 2	F	387	390	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	401	403	first strand
Strand 2	F	452	454	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJT