Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TJW entry

There are 2 chains in PDB entry 5TJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 21GLY 490
K
 GLN 2SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5TJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 48Right-handed alpha
Helix 2
AA2
A
50 56Right-handed alpha
Helix 3
AA3
A
56 71Right-handed alpha
Helix 4
AA4
A
72 81Right-handed alpha
Helix 5
AA5
A
113 124Right-handed alpha
Helix 6
AA6
A
129 148Right-handed alpha
Helix 7
AA7
A
150 158Right-handed alpha
Helix 8
AA8
A
160 167Right-handed 310
Helix 9
AA9
A
177 183Right-handed alpha
Helix 10
AB1
A
185 200Right-handed alpha
Helix 11
AB2
A
209 230Right-handed alpha
Helix 12
AB3
A
232 244Right-handed alpha
Helix 13
AB4
A
249 263Right-handed alpha
Helix 14
AB5
A
277 287Right-handed alpha
Helix 15
AB6
A
290 295Right-handed alpha
Helix 16
AB7
A
301 309Right-handed alpha
Helix 17
AB8
A
321 334Right-handed alpha
Helix 18
AB9
A
335 339Right-handed 310
Helix 19
AC1
A
340 349Right-handed alpha
Helix 20
AC2
A
354 358Right-handed 310
Helix 21
AC3
A
421 428Right-handed alpha
Helix 22
AC4
A
437 451Right-handed alpha
Helix 23
AC5
K
26 31Right-handed alpha
Helix 24
AC6
K
88 92Right-handed 310
Helix 25
AC7
K
107 111Right-handed 310
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There are 6 sheets in PDB entry 5TJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 100first strand
Strand 2
A
103 112anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
375 378anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
464 465anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
5 8first strand
Strand 2
K
19 25anti-parallel
Strand 3
K
79 84anti-parallel
Strand 4
K
69 73anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 13first strand
Strand 2
K
119 122parallel
Strand 3
K
93 100anti-parallel
Strand 4
K
34 40anti-parallel
Strand 5
K
47 53anti-parallel
Strand 6
K
59 61anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 13first strand
Strand 2
K
119 122parallel
Strand 3
K
93 100anti-parallel
Strand 4
K
113 114anti-parallel
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