Analysis of interatomic Contacts of Structural Units in PDB entry:
5TJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TJY entry

There is 1 chain in PDB entry 5TJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5TJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
38 44Right-handed alpha
Helix 3
AA3
A
57 68Right-handed alpha
Helix 4
AA4
A
80 93Right-handed alpha
Helix 5
AA5
A
106 120Right-handed alpha
Helix 6
AA6
A
121 123Right-handed 310
Helix 7
AA7
A
141 155Right-handed alpha
Helix 8
AA8
A
213 216Right-handed 310
Helix 9
AA9
A
217 228Right-handed alpha
Helix 10
AB1
A
229 231Right-handed 310
Helix 11
AB2
A
238 242Right-handed 310
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There are 2 sheets in PDB entry 5TJY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 32first strand
Strand 2
A
1 6parallel
Strand 3
A
48 51parallel
Strand 4
A
71 74parallel
Strand 5
A
98 101parallel
Strand 6
A
233 236parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
180 186anti-parallel
Strand 3
A
125 132parallel
Strand 4
A
192 200anti-parallel
Strand 5
A
203 211anti-parallel
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