Analysis of interatomic Contacts of Structural Units in PDB entry:
5TKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TKC entry

There is 1 chain in PDB entry 5TKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 2TYR 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5TKC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
36 46Right-handed alpha
Helix 3
AA3
A
52 65Right-handed alpha
Helix 4
AA4
A
68 71Right-handed 310
Helix 5
AA5
A
79 84Right-handed alpha
Helix 6
AA6
A
92 100Right-handed alpha
Helix 7
AA7
A
129 140Right-handed alpha
Helix 8
AA8
A
154 158Right-handed 310
Helix 9
AA9
A
161 182Right-handed alpha
Helix 10
AB1
A
199 221Right-handed alpha
Helix 11
AB2
A
224 228Right-handed 310
Helix 12
AB3
A
246 260Right-handed alpha
Helix 13
AB4
A
277 291Right-handed alpha
Helix 14
AB5
A
303 315Right-handed alpha
Helix 15
AB6
A
317 319Right-handed 310
Helix 16
AB7
A
320 340Right-handed alpha
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There are 2 sheets in PDB entry 5TKC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 33first strand
Strand 2
A
73 78parallel
Strand 3
A
103 107parallel
Strand 4
A
144 151parallel
Strand 5
A
185 192parallel
Strand 6
A
229 230parallel
Strand 7
A
268 271parallel
Strand 8
A
297 302parallel
Strand 9
A
29 33parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 114first strand
Strand 2
A
122 124anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il