Analysis of interatomic Contacts of Structural Units in PDB entry:
5TKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TKR entry

There is 1 chain in PDB entry 5TKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10GLU 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5TKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 71Right-handed alpha
Helix 2
AA2
A
74 100Right-handed alpha
Helix 3
AA3
A
103 107Right-handed 310
Helix 4
AA4
A
136 145Right-handed alpha
Helix 5
AA5
A
151 159Right-handed alpha
Helix 6
AA6
A
167 176Right-handed alpha
Helix 7
AA7
A
217 228Right-handed alpha
Helix 8
AA8
A
235 237Right-handed 310
Helix 9
AA9
A
238 244Right-handed alpha
Helix 10
AB1
A
247 255Right-handed alpha
Helix 11
AB2
A
257 262Right-handed alpha
Helix 12
AB3
A
274 288Right-handed alpha
Helix 13
AB4
A
291 315Right-handed alpha
Helix 14
AB5
A
327 331Right-handed 310
Helix 15
AB6
A
332 343Right-handed alpha
Helix 16
AB7
A
352 355Right-handed 310
Helix 17
AB8
A
360 376Right-handed alpha
Helix 18
AB9
A
401 411Right-handed alpha
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There are 3 sheets in PDB entry 5TKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
109 120anti-parallel
Strand 3
A
148 150parallel
Strand 4
A
395 397anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
109 120anti-parallel
Strand 3
A
12 21parallel
Strand 4
A
27 37anti-parallel
Strand 5
A
44 55anti-parallel
Strand 6
A
425 429parallel
Strand 7
A
432 434anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 215first strand
Strand 2
A
190 196anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
322 326parallel
Strand 5
A
347 350parallel
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