Analysis of interatomic Contacts of Structural Units in PDB entry:
5TKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TKW entry

There is 1 chain in PDB entry 5TKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ARG 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5TKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 56Right-handed alpha
Helix 2
AA2
A
63 65Right-handed 310
Helix 3
AA3
A
81 91Right-handed alpha
Helix 4
AA4
A
92 94Right-handed 310
Helix 5
AA5
A
97 99Right-handed 310
Helix 6
AA6
A
120 133Right-handed alpha
Helix 7
AA7
A
144 147Right-handed 310
Helix 8
AA8
A
176 178Right-handed 310
Helix 9
AA9
A
179 185Right-handed alpha
Helix 10
AB1
A
213 220Right-handed alpha
Helix 11
AB2
A
221 227Right-handed 310
Helix 12
AB3
A
231 235Right-handed 310
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There are 3 sheets in PDB entry 5TKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
23 28anti-parallel
Strand 3
A
11 15anti-parallel
Strand 4
A
58 62parallel
Strand 5
A
137 142parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 73first strand
Strand 2
A
112 119anti-parallel
Strand 3
A
101 109anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
162 168anti-parallel
Strand 3
A
154 159anti-parallel
Strand 4
A
192 195parallel
Strand 5
A
205 208parallel
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