Analysis of interatomic Contacts of Structural Units in PDB entry:
5TL4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TL4 entry

There are 3 chains in PDB entry 5TL4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	ALA 467
B	THR 3	VAL 454
C	THR 3	GLU 357

There are 77 helices in PDB entry 5TL4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	14	Right-handed alpha
Helix 2	AA2	A	16	23	Right-handed alpha
Helix 3	AA3	A	40	51	Right-handed alpha
Helix 4	AA4	A	70	79	Right-handed alpha
Helix 5	AA5	A	122	136	Right-handed alpha
Helix 6	AA6	A	170	180	Right-handed alpha
Helix 7	AA7	A	222	235	Right-handed alpha
Helix 8	AA8	A	246	248	Right-handed 310
Helix 9	AA9	A	249	255	Right-handed alpha
Helix 10	AB1	A	267	269	Right-handed 310
Helix 11	AB2	A	270	277	Right-handed alpha
Helix 12	AB3	A	281	286	Right-handed alpha
Helix 13	AB4	A	296	301	Right-handed 310
Helix 14	AB5	A	303	308	Right-handed 310
Helix 15	AB6	A	309	313	Right-handed 310
Helix 16	AB7	A	321	327	Right-handed alpha
Helix 17	AB8	A	329	333	Right-handed 310
Helix 18	AB9	A	342	352	Right-handed alpha
Helix 19	AC1	A	353	355	Right-handed 310
Helix 20	AC2	A	425	429	Right-handed 310
Helix 21	AC3	B	6	14	Right-handed alpha
Helix 22	AC4	B	16	23	Right-handed alpha
Helix 23	AC5	B	40	51	Right-handed alpha
Helix 24	AC6	B	70	79	Right-handed alpha
Helix 25	AC7	B	122	136	Right-handed alpha
Helix 26	AC8	B	170	180	Right-handed alpha
Helix 27	AC9	B	222	235	Right-handed alpha
Helix 28	AD1	B	246	248	Right-handed 310
Helix 29	AD2	B	249	255	Right-handed alpha
Helix 30	AD3	B	267	269	Right-handed 310
Helix 31	AD4	B	270	277	Right-handed alpha
Helix 32	AD5	B	281	286	Right-handed alpha
Helix 33	AD6	B	296	301	Right-handed 310
Helix 34	AD7	B	303	308	Right-handed 310
Helix 35	AD8	B	309	313	Right-handed 310
Helix 36	AD9	B	321	327	Right-handed alpha
Helix 37	AE1	B	329	333	Right-handed 310
Helix 38	AE2	B	342	352	Right-handed alpha
Helix 39	AE3	B	353	355	Right-handed 310
Helix 40	AE4	C	6	14	Right-handed alpha
Helix 41	AE5	C	16	23	Right-handed alpha
Helix 42	AE6	C	40	51	Right-handed alpha
Helix 43	AE7	C	70	79	Right-handed alpha
Helix 44	AE8	C	122	136	Right-handed alpha
Helix 45	AE9	C	170	180	Right-handed alpha
Helix 46	AF1	C	222	235	Right-handed alpha
Helix 47	AF2	C	246	248	Right-handed 310
Helix 48	AF3	C	249	255	Right-handed alpha
Helix 49	AF4	C	267	269	Right-handed 310
Helix 50	AF5	C	270	277	Right-handed alpha
Helix 51	AF6	C	281	286	Right-handed alpha
Helix 52	AF7	C	296	301	Right-handed 310
Helix 53	AF8	C	303	308	Right-handed 310
Helix 54	AF9	C	309	313	Right-handed 310
Helix 55	AG1	C	321	327	Right-handed alpha
Helix 56	AG2	C	329	333	Right-handed 310
Helix 57	AG3	C	342	352	Right-handed alpha
Helix 58	AG4	C	353	355	Right-handed 310
Helix 59	AG5	D	6	14	Right-handed alpha
Helix 60	AG6	D	16	23	Right-handed alpha
Helix 61	AG7	D	40	51	Right-handed alpha
Helix 62	AG8	D	70	79	Right-handed alpha
Helix 63	AG9	D	122	136	Right-handed alpha
Helix 64	AH1	D	170	180	Right-handed alpha
Helix 65	AH2	D	222	235	Right-handed alpha
Helix 66	AH3	D	246	248	Right-handed 310
Helix 67	AH4	D	249	255	Right-handed alpha
Helix 68	AH5	D	267	269	Right-handed 310
Helix 69	AH6	D	270	277	Right-handed alpha
Helix 70	AH7	D	281	286	Right-handed alpha
Helix 71	AH8	D	296	301	Right-handed 310
Helix 72	AH9	D	303	308	Right-handed 310
Helix 73	AI1	D	309	313	Right-handed 310
Helix 74	AI2	D	321	327	Right-handed alpha
Helix 75	AI3	D	329	333	Right-handed 310
Helix 76	AI4	D	342	352	Right-handed alpha
Helix 77	AI5	D	353	355	Right-handed 310

There are 16 sheets in PDB entry 5TL4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	196	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	213	219	anti-parallel
Strand 4	A	161	167	anti-parallel
Strand 5	A	52	56	anti-parallel
Strand 6	A	239	242	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	107	113	anti-parallel
Strand 3	A	116	121	anti-parallel
Strand 4	A	62	67	anti-parallel
Strand 5	A	141	145	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	289	first strand
Strand 2	A	375	376	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	341	first strand
Strand 2	A	402	409	anti-parallel
Strand 3	A	387	397	anti-parallel
Strand 4	A	378	381	anti-parallel
Strand 5	A	418	423	anti-parallel
Strand 6	A	441	448	anti-parallel
Strand 7	A	335	341	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	196	first strand
Strand 2	B	199	205	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	161	167	anti-parallel
Strand 5	B	52	56	anti-parallel
Strand 6	B	239	242	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	94	first strand
Strand 2	B	107	113	anti-parallel
Strand 3	B	116	121	anti-parallel
Strand 4	B	62	67	anti-parallel
Strand 5	B	141	145	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	375	376	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	341	first strand
Strand 2	B	402	409	anti-parallel
Strand 3	B	387	397	anti-parallel
Strand 4	B	378	381	anti-parallel
Strand 5	B	418	423	anti-parallel
Strand 6	B	441	448	anti-parallel
Strand 7	B	335	341	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	196	first strand
Strand 2	C	199	206	anti-parallel
Strand 3	C	213	219	anti-parallel
Strand 4	C	161	167	anti-parallel
Strand 5	C	52	56	anti-parallel
Strand 6	C	239	242	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	107	113	anti-parallel
Strand 3	C	116	121	anti-parallel
Strand 4	C	62	67	anti-parallel
Strand 5	C	141	145	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	375	376	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	341	first strand
Strand 2	C	402	409	anti-parallel
Strand 3	C	387	397	anti-parallel
Strand 4	C	378	381	anti-parallel
Strand 5	C	418	423	anti-parallel
Strand 6	C	441	448	anti-parallel
Strand 7	C	335	341	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	196	first strand
Strand 2	D	199	206	anti-parallel
Strand 3	D	213	219	anti-parallel
Strand 4	D	161	167	anti-parallel
Strand 5	D	52	56	anti-parallel
Strand 6	D	239	242	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	107	113	anti-parallel
Strand 3	D	116	121	anti-parallel
Strand 4	D	62	67	anti-parallel
Strand 5	D	141	145	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	289	first strand
Strand 2	D	375	376	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	341	first strand
Strand 2	D	402	409	anti-parallel
Strand 3	D	387	397	anti-parallel
Strand 4	D	378	381	anti-parallel
Strand 5	D	418	423	anti-parallel
Strand 6	D	441	448	anti-parallel
Strand 7	D	335	341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TL4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TL4