Analysis of interatomic Contacts of Structural Units in PDB entry:
5TL7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TL7 entry

There are 4 chains in PDB entry 5TL7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 79	GLY 154
B	MET 1	LYS 316
C	PRO 79	GLY 154
D	LYS 4	LYS 316

There are 27 helices in PDB entry 5TL7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	101	114	Right-handed alpha
Helix 2	AA2	A	116	118	Right-handed 310
Helix 3	AA3	A	134	139	Right-handed 310
Helix 4	AA4	B	27	33	Right-handed alpha
Helix 5	AA5	B	48	52	Right-handed 310
Helix 6	AA6	B	64	74	Right-handed alpha
Helix 7	AA7	B	79	92	Right-handed alpha
Helix 8	AA8	B	111	122	Right-handed alpha
Helix 9	AA9	B	130	142	Right-handed alpha
Helix 10	AB1	B	145	156	Right-handed alpha
Helix 11	AB2	B	165	175	Right-handed alpha
Helix 12	AB3	B	202	206	Right-handed alpha
Helix 13	AB4	B	213	220	Right-handed alpha
Helix 14	AB5	C	101	114	Right-handed alpha
Helix 15	AB6	C	116	118	Right-handed 310
Helix 16	AB7	C	134	139	Right-handed 310
Helix 17	AB8	D	27	33	Right-handed alpha
Helix 18	AB9	D	48	52	Right-handed 310
Helix 19	AC1	D	63	74	Right-handed alpha
Helix 20	AC2	D	79	92	Right-handed alpha
Helix 21	AC3	D	111	122	Right-handed alpha
Helix 22	AC4	D	130	143	Right-handed alpha
Helix 23	AC5	D	145	157	Right-handed alpha
Helix 24	AC6	D	165	174	Right-handed alpha
Helix 25	AC7	D	175	177	Right-handed 310
Helix 26	AC8	D	202	206	Right-handed alpha
Helix 27	AC9	D	213	220	Right-handed alpha

There are 12 sheets in PDB entry 5TL7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	96	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	145	150	parallel
Strand 4	A	120	124	anti-parallel
Strand 5	A	127	128	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	5	11	anti-parallel
Strand 3	B	55	58	parallel
Strand 4	B	35	37	anti-parallel
Strand 5	B	40	41	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	201	first strand
Strand 2	B	183	190	anti-parallel
Strand 3	B	230	239	anti-parallel
Strand 4	B	221	224	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	201	first strand
Strand 2	B	183	190	anti-parallel
Strand 3	B	230	239	anti-parallel
Strand 4	B	310	312	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	242	255	parallel
Strand 3	B	296	307	anti-parallel
Strand 4	B	261	267	anti-parallel
Strand 5	B	272	279	anti-parallel
Strand 6	B	283	287	anti-parallel
Strand 7	B	290	294	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	96	first strand
Strand 2	C	80	85	anti-parallel
Strand 3	C	145	150	parallel
Strand 4	C	120	124	anti-parallel
Strand 5	C	127	128	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	5	11	anti-parallel
Strand 3	D	55	58	parallel
Strand 4	D	35	37	anti-parallel
Strand 5	D	40	41	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	102	103	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	201	first strand
Strand 2	D	183	190	anti-parallel
Strand 3	D	230	239	anti-parallel
Strand 4	D	221	224	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	201	first strand
Strand 2	D	183	190	anti-parallel
Strand 3	D	230	239	anti-parallel
Strand 4	D	310	312	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	209	first strand
Strand 2	D	242	254	parallel
Strand 3	D	297	307	anti-parallel
Strand 4	D	261	267	anti-parallel
Strand 5	D	272	279	anti-parallel
Strand 6	D	283	287	anti-parallel
Strand 7	D	290	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TL7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TL7