Analysis of interatomic Contacts of Structural Units in PDB entry:
5TMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TMA entry

There are 2 chains in PDB entry 5TMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 567
B
 MET 1ASN 565
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 5TMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
26 28Right-handed 310
Helix 3
AA3
A
29 38Right-handed alpha
Helix 4
AA4
A
49 65Right-handed alpha
Helix 5
AA5
A
76 90Right-handed alpha
Helix 6
AA6
A
102 106Right-handed 310
Helix 7
AA7
A
122 130Right-handed alpha
Helix 8
AA8
A
140 142Right-handed 310
Helix 9
AA9
A
143 159Right-handed alpha
Helix 10
AB1
A
180 185Right-handed 310
Helix 11
AB2
A
191 206Right-handed alpha
Helix 12
AB3
A
225 237Right-handed alpha
Helix 13
AB4
A
245 247Right-handed 310
Helix 14
AB5
A
262 266Right-handed 310
Helix 15
AB6
A
269 276Right-handed alpha
Helix 16
AB7
A
323 335Right-handed alpha
Helix 17
AB8
A
339 348Right-handed alpha
Helix 18
AB9
A
366 378Right-handed alpha
Helix 19
AC1
A
389 398Right-handed alpha
Helix 20
AC2
A
417 429Right-handed alpha
Helix 21
AC3
A
440 447Right-handed alpha
Helix 22
AC4
A
448 456Right-handed alpha
Helix 23
AC5
A
470 475Right-handed alpha
Helix 24
AC6
A
479 483Right-handed 310
Helix 25
AC7
A
488 498Right-handed alpha
Helix 26
AC8
A
501 505Right-handed 310
Helix 27
AC9
A
514 528Right-handed alpha
Helix 28
AD1
A
545 561Right-handed alpha
Helix 29
AD2
B
5 16Right-handed alpha
Helix 30
AD3
B
26 28Right-handed 310
Helix 31
AD4
B
29 39Right-handed alpha
Helix 32
AD5
B
49 65Right-handed alpha
Helix 33
AD6
B
76 90Right-handed alpha
Helix 34
AD7
B
102 106Right-handed 310
Helix 35
AD8
B
122 130Right-handed alpha
Helix 36
AD9
B
140 142Right-handed 310
Helix 37
AE1
B
143 159Right-handed alpha
Helix 38
AE2
B
180 185Right-handed 310
Helix 39
AE3
B
191 207Right-handed alpha
Helix 40
AE4
B
225 237Right-handed alpha
Helix 41
AE5
B
245 247Right-handed 310
Helix 42
AE6
B
262 266Right-handed 310
Helix 43
AE7
B
269 277Right-handed alpha
Helix 44
AE8
B
323 335Right-handed alpha
Helix 45
AE9
B
339 348Right-handed alpha
Helix 46
AF1
B
366 378Right-handed alpha
Helix 47
AF2
B
389 397Right-handed alpha
Helix 48
AF3
B
417 429Right-handed alpha
Helix 49
AF4
B
440 447Right-handed alpha
Helix 50
AF5
B
449 456Right-handed alpha
Helix 51
AF6
B
470 475Right-handed alpha
Helix 52
AF7
B
479 483Right-handed 310
Helix 53
AF8
B
491 498Right-handed alpha
Helix 54
AF9
B
514 528Right-handed alpha
Helix 55
AG1
B
545 561Right-handed alpha
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There are 8 sheets in PDB entry 5TMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
174 175anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
20 23parallel
Strand 3
A
67 71parallel
Strand 4
A
94 100parallel
Strand 5
A
162 167parallel
Strand 6
A
134 138parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
B
317 320parallel
Strand 3
B
311 314anti-parallel
Strand 4
B
304 307anti-parallel
Strand 5
B
279 283parallel
Strand 6
B
212 216parallel
Strand 7
B
239 243parallel
Strand 8
B
257 261parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
239 243parallel
Strand 3
A
212 216parallel
Strand 4
A
279 283parallel
Strand 5
A
304 307parallel
Strand 6
A
311 314anti-parallel
Strand 7
A
317 320anti-parallel
Strand 8
B
177 178parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 407first strand
Strand 2
A
382 386parallel
Strand 3
A
433 439parallel
Strand 4
A
461 466parallel
Strand 5
A
533 538parallel
Strand 6
A
508 512parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
174 175anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
20 23parallel
Strand 3
B
67 71parallel
Strand 4
B
94 100parallel
Strand 5
B
162 167parallel
Strand 6
B
134 138parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 408first strand
Strand 2
B
382 386parallel
Strand 3
B
433 439parallel
Strand 4
B
461 466parallel
Strand 5
B
533 538parallel
Strand 6
B
508 512parallel
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