Analysis of interatomic Contacts of Structural Units in PDB entry:
5TMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TMC entry

There are 3 chains in PDB entry 5TMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 231
B	MET 1	GLU 238
C	MET 1	GLY 798

There are118 helices in PDB entry 5TMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	48	Right-handed alpha
Helix 2	AA2	A	74	83	Right-handed alpha
Helix 3	AA3	A	152	156	Right-handed 310
Helix 4	AA4	A	206	223	Right-handed alpha
Helix 5	AA5	A	224	226	Right-handed 310
Helix 6	AA6	B	31	45	Right-handed alpha
Helix 7	AA7	B	74	83	Right-handed alpha
Helix 8	AA8	B	152	156	Right-handed 310
Helix 9	AA9	B	206	222	Right-handed alpha
Helix 10	AB1	B	223	225	Right-handed 310
Helix 11	AB2	C	19	31	Right-handed alpha
Helix 12	AB3	C	43	52	Right-handed alpha
Helix 13	AB4	C	79	86	Right-handed alpha
Helix 14	AB5	C	194	200	Right-handed alpha
Helix 15	AB6	C	230	235	Right-handed alpha
Helix 16	AB7	C	272	277	Right-handed alpha
Helix 17	AB8	C	302	314	Right-handed alpha
Helix 18	AB9	C	327	329	Right-handed 310
Helix 19	AC1	C	335	342	Right-handed alpha
Helix 20	AC2	C	347	358	Right-handed alpha
Helix 21	AC3	C	375	387	Right-handed alpha
Helix 22	AC4	C	399	406	Right-handed alpha
Helix 23	AC5	C	445	449	Right-handed 310
Helix 24	AC6	C	487	492	Right-handed alpha
Helix 25	AC7	C	525	529	Right-handed 310
Helix 26	AC8	C	535	540	Right-handed 310
Helix 27	AC9	C	549	553	Right-handed 310
Helix 28	AD1	C	554	565	Right-handed alpha
Helix 29	AD2	C	566	568	Right-handed 310
Helix 30	AD3	C	582	591	Right-handed alpha
Helix 31	AD4	C	692	697	Right-handed alpha
Helix 32	AD5	C	770	780	Right-handed alpha
Helix 33	AD6	C	882	897	Right-handed alpha
Helix 34	AD7	C	910	927	Right-handed alpha
Helix 35	AD8	C	937	951	Right-handed alpha
Helix 36	AD9	C	958	969	Right-handed alpha
Helix 37	AE1	C	1033	1044	Right-handed alpha
Helix 38	AE2	C	1045	1051	Right-handed alpha
Helix 39	AE3	C	1059	1073	Right-handed alpha
Helix 40	AE4	C	1082	1095	Right-handed alpha
Helix 41	AE5	D	14	22	Right-handed alpha
Helix 42	AE6	D	46	51	Right-handed alpha
Helix 43	AE7	D	82	88	Right-handed 310
Helix 44	AE8	D	102	107	Right-handed alpha
Helix 45	AE9	D	110	116	Right-handed alpha
Helix 46	AF1	D	119	128	Right-handed alpha
Helix 47	AF2	D	154	162	Right-handed alpha
Helix 48	AF3	D	178	182	Right-handed 310
Helix 49	AF4	D	456	468	Right-handed alpha
Helix 50	AF5	D	469	481	Right-handed alpha
Helix 51	AF6	D	493	506	Right-handed alpha
Helix 52	AF7	D	539	561	Right-handed alpha
Helix 53	AF8	D	563	583	Right-handed alpha
Helix 54	AF9	D	602	608	Right-handed alpha
Helix 55	AG1	D	613	618	Right-handed alpha
Helix 56	AG2	D	646	653	Right-handed alpha
Helix 57	AG3	D	653	664	Right-handed alpha
Helix 58	AG4	D	669	676	Right-handed alpha
Helix 59	AG5	D	677	678	Right-handed 310
Helix 60	AG6	D	679	683	Right-handed 310
Helix 61	AG7	D	687	696	Right-handed alpha
Helix 62	AG8	D	709	713	Right-handed 310
Helix 63	AG9	D	732	737	Right-handed alpha
Helix 64	AH1	D	754	763	Right-handed alpha
Helix 65	AH2	D	783	794	Right-handed alpha
Helix 66	AH3	D	810	818	Right-handed alpha
Helix 67	AH4	D	845	855	Right-handed alpha
Helix 68	AH5	D	876	890	Right-handed alpha
Helix 69	AH6	D	892	898	Right-handed alpha
Helix 70	AH7	D	907	921	Right-handed alpha
Helix 71	AH8	D	923	946	Right-handed alpha
Helix 72	AH9	D	950	954	Right-handed 310
Helix 73	AI1	D	958	980	Right-handed alpha
Helix 74	AI2	D	984	1014	Right-handed alpha
Helix 75	AI3	D	1018	1026	Right-handed alpha
Helix 76	AI4	D	1031	1040	Right-handed alpha
Helix 77	AI5	D	1068	1073	Right-handed alpha
Helix 78	AI6	D	1074	1080	Right-handed alpha
Helix 79	AI7	D	1091	1101	Right-handed alpha
Helix 80	AI8	D	1136	1145	Right-handed alpha
Helix 81	AI9	D	1167	1180	Right-handed alpha
Helix 82	AJ1	D	1220	1231	Right-handed alpha
Helix 83	AJ2	D	1232	1236	Right-handed 310
Helix 84	AJ3	D	1255	1264	Right-handed alpha
Helix 85	AJ4	D	1331	1358	Right-handed alpha
Helix 86	AJ5	D	1364	1376	Right-handed alpha
Helix 87	AJ6	D	1433	1438	Right-handed alpha
Helix 88	AJ7	D	1443	1454	Right-handed alpha
Helix 89	AJ8	D	1461	1468	Right-handed alpha
Helix 90	AJ9	D	1474	1478	Right-handed 310
Helix 91	AK1	D	1490	1495	Right-handed 310
Helix 92	AK2	E	5	12	Right-handed alpha
Helix 93	AK3	E	15	31	Right-handed alpha
Helix 94	AK4	E	41	45	Right-handed 310
Helix 95	AK5	E	59	69	Right-handed alpha
Helix 96	AK6	E	87	93	Right-handed alpha
Helix 97	AK7	F	78	89	Right-handed alpha
Helix 98	AK8	F	97	121	Right-handed alpha
Helix 99	AK9	F	123	136	Right-handed alpha
Helix 100	AL1	F	145	149	Right-handed 310
Helix 101	AL2	F	154	165	Right-handed alpha
Helix 102	AL3	F	167	191	Right-handed alpha
Helix 103	AL4	F	191	200	Right-handed alpha
Helix 104	AL5	F	208	226	Right-handed alpha
Helix 105	AL6	F	235	255	Right-handed alpha
Helix 106	AL7	F	261	282	Right-handed alpha
Helix 107	AL8	F	287	296	Right-handed alpha
Helix 108	AL9	F	300	310	Right-handed alpha
Helix 109	AM1	F	328	333	Right-handed 310
Helix 110	AM2	F	340	350	Right-handed alpha
Helix 111	AM3	F	350	355	Right-handed alpha
Helix 112	AM4	F	368	373	Right-handed alpha
Helix 113	AM5	F	396	400	Right-handed 310
Helix 114	AM6	F	409	414	Right-handed alpha
Helix 115	AM7	F	418	423	Right-handed 310
Helix 116	AM8	Z	16	19	Right-handed 310
Helix 117	AM9	Z	20	25	Right-handed alpha
Helix 118	AN1	Z	47	52	Right-handed alpha

There are 48 sheets in PDB entry 5TMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	192	201	anti-parallel
Strand 3	A	174	184	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	101	first strand
Strand 2	A	140	145	anti-parallel
Strand 3	A	53	58	anti-parallel
Strand 4	A	165	166	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	120	122	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	128	132	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	169	170	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	193	201	anti-parallel
Strand 4	B	174	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	103	first strand
Strand 2	B	138	145	anti-parallel
Strand 3	B	53	57	anti-parallel
Strand 4	B	164	166	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	121	122	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	169	170	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	899	902	parallel
Strand 3	C	579	580	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	65	66	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	73	first strand
Strand 2	C	94	95	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	C	107	108	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	132	136	anti-parallel
Strand 3	C	392	394	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	334	first strand
Strand 2	C	138	142	anti-parallel
Strand 3	C	409	411	parallel
Strand 4	C	452	454	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	158	163	anti-parallel
Strand 3	C	172	175	anti-parallel
Strand 4	C	183	185	anti-parallel
Strand 5	C	190	192	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	461	first strand
Strand 2	C	467	475	anti-parallel
Strand 3	C	478	486	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	461	first strand
Strand 2	C	467	475	anti-parallel
Strand 3	C	531	533	anti-parallel
Strand 4	C	495	497	parallel
Strand 5	C	513	517	anti-parallel
Strand 6	C	520	524	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	503	504	first strand
Strand 2	C	507	508	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	596	first strand
Strand 2	C	654	657	anti-parallel
Strand 3	C	640	641	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	601	606	first strand
Strand 2	C	610	615	anti-parallel
Strand 3	C	620	624	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	629	630	first strand
Strand 2	C	636	637	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	670	676	first strand
Strand 2	C	869	871	parallel
Strand 3	C	688	691	anti-parallel
Strand 4	C	845	853	parallel
Strand 5	C	838	841	anti-parallel
Strand 6	C	991	996	anti-parallel
Strand 7	C	670	676	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	703	713	first strand
Strand 2	C	819	830	anti-parallel
Strand 3	C	798	807	anti-parallel
Strand 4	C	748	749	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	754	756	first strand
Strand 2	C	790	791	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	761	first strand
Strand 2	C	785	787	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	971	972	first strand
Strand 2	C	987	988	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1008	first strand
Strand 2	D	626	633	anti-parallel
Strand 3	D	744	748	anti-parallel
Strand 4	D	701	703	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1008	first strand
Strand 2	D	626	633	anti-parallel
Strand 3	D	725	728	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1030	1032	first strand
Strand 2	D	621	623	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1097	1103	first strand
Strand 2	D	5	12	anti-parallel
Strand 3	D	1456	1458	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	100	first strand
Strand 2	D	513	519	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	132	136	anti-parallel
Strand 3	D	453	455	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	169	first strand
Strand 2	D	393	396	anti-parallel
Strand 3	D	202	204	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	346	first strand
Strand 2	D	210	215	anti-parallel
Strand 3	D	383	387	anti-parallel
Strand 4	D	360	361	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	225	first strand
Strand 2	D	331	333	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	353	first strand
Strand 2	D	368	369	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	399	first strand
Strand 2	D	446	448	anti-parallel
Strand 3	D	433	435	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	422	first strand
Strand 2	D	427	429	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	529	first strand
Strand 2	D	535	537	anti-parallel
Strand 3	F	315	316	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	641	645	first strand
Strand 2	D	717	721	parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	842	843	first strand
Strand 2	D	864	868	parallel
Strand 3	D	871	875	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1118	1121	first strand
Strand 2	D	1185	1189	anti-parallel
Strand 3	D	1148	1149	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1123	1124	first strand
Strand 2	D	1133	1134	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1153	1154	first strand
Strand 2	D	1159	1160	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1280	1285	first strand
Strand 2	D	1290	1295	anti-parallel
Strand 3	D	1301	1303	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1392	1394	first strand
Strand 2	D	1378	1383	anti-parallel
Strand 3	D	1416	1419	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1485	1488	first strand
Strand 2	E	73	76	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TMC