Analysis of interatomic Contacts of Structural Units in PDB entry:
5TME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TME entry

There is 1 chain in PDB entry 5TME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 15SER 465
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5TME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 41Right-handed alpha
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
77 82Right-handed alpha
Helix 4
AA4
A
84 110Right-handed alpha
Helix 5
AA5
A
123 133Right-handed alpha
Helix 6
AA6
A
144 156Right-handed alpha
Helix 7
AA7
A
164 174Right-handed alpha
Helix 8
AA8
A
187 192Right-handed alpha
Helix 9
AA9
A
196 206Right-handed alpha
Helix 10
AB1
A
207 208Right-handed 310
Helix 11
AB2
A
209 213Right-handed 310
Helix 12
AB3
A
225 237Right-handed alpha
Helix 13
AB4
A
246 251Right-handed 310
Helix 14
AB5
A
270 278Right-handed alpha
Helix 15
AB6
A
296 310Right-handed alpha
Helix 16
AB7
A
322 326Right-handed 310
Helix 17
AB8
A
327 333Right-handed alpha
Helix 18
AB9
A
345 352Right-handed alpha
Helix 19
AC1
A
363 374Right-handed alpha
Helix 20
AC2
A
385 396Right-handed alpha
Helix 21
AC3
A
412 426Right-handed alpha
Helix 22
AC4
A
428 448Right-handed alpha
Helix 23
AC5
A
451 464Right-handed alpha
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There are 2 sheets in PDB entry 5TME. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
45 50parallel
Strand 3
A
16 19parallel
Strand 4
A
116 119parallel
Strand 5
A
136 141parallel
Strand 6
A
215 218parallel
Strand 7
A
238 240parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 341first strand
Strand 2
A
314 317parallel
Strand 3
A
284 288parallel
Strand 4
A
355 360parallel
Strand 5
A
377 379parallel
Strand 6
A
400 402parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il