Analysis of interatomic Contacts of Structural Units in PDB entry:
5TMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TMF entry

There are 3 chains in PDB entry 5TMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 231
B	MET 1	GLU 238
C	MET 1	GLY 798

There are122 helices in PDB entry 5TMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	48	Right-handed alpha
Helix 2	AA2	A	74	84	Right-handed alpha
Helix 3	AA3	A	112	114	Right-handed 310
Helix 4	AA4	A	152	156	Right-handed 310
Helix 5	AA5	A	206	220	Right-handed alpha
Helix 6	AA6	A	221	226	Right-handed 310
Helix 7	AA7	B	31	47	Right-handed alpha
Helix 8	AA8	B	74	83	Right-handed alpha
Helix 9	AA9	B	206	223	Right-handed alpha
Helix 10	AB1	C	19	31	Right-handed alpha
Helix 11	AB2	C	43	52	Right-handed alpha
Helix 12	AB3	C	79	86	Right-handed alpha
Helix 13	AB4	C	195	200	Right-handed alpha
Helix 14	AB5	C	203	208	Right-handed alpha
Helix 15	AB6	C	231	237	Right-handed alpha
Helix 16	AB7	C	238	242	Right-handed 310
Helix 17	AB8	C	247	251	Right-handed 310
Helix 18	AB9	C	272	281	Right-handed alpha
Helix 19	AC1	C	302	314	Right-handed alpha
Helix 20	AC2	C	335	361	Right-handed alpha
Helix 21	AC3	C	375	389	Right-handed alpha
Helix 22	AC4	C	399	408	Right-handed alpha
Helix 23	AC5	C	431	435	Right-handed 310
Helix 24	AC6	C	487	492	Right-handed alpha
Helix 25	AC7	C	525	529	Right-handed 310
Helix 26	AC8	C	535	540	Right-handed 310
Helix 27	AC9	C	541	546	Right-handed alpha
Helix 28	AD1	C	549	553	Right-handed 310
Helix 29	AD2	C	554	568	Right-handed alpha
Helix 30	AD3	C	583	591	Right-handed alpha
Helix 31	AD4	C	692	697	Right-handed alpha
Helix 32	AD5	C	763	766	Right-handed 310
Helix 33	AD6	C	768	777	Right-handed alpha
Helix 34	AD7	C	872	876	Right-handed 310
Helix 35	AD8	C	882	898	Right-handed alpha
Helix 36	AD9	C	910	926	Right-handed alpha
Helix 37	AE1	C	937	950	Right-handed alpha
Helix 38	AE2	C	958	968	Right-handed alpha
Helix 39	AE3	C	1000	1004	Right-handed 310
Helix 40	AE4	C	1034	1044	Right-handed alpha
Helix 41	AE5	C	1045	1054	Right-handed alpha
Helix 42	AE6	C	1059	1072	Right-handed alpha
Helix 43	AE7	C	1082	1094	Right-handed alpha
Helix 44	AE8	D	14	22	Right-handed alpha
Helix 45	AE9	D	46	51	Right-handed alpha
Helix 46	AF1	D	82	88	Right-handed 310
Helix 47	AF2	D	102	107	Right-handed alpha
Helix 48	AF3	D	110	117	Right-handed alpha
Helix 49	AF4	D	119	128	Right-handed alpha
Helix 50	AF5	D	154	162	Right-handed alpha
Helix 51	AF6	D	178	182	Right-handed 310
Helix 52	AF7	D	456	468	Right-handed alpha
Helix 53	AF8	D	469	479	Right-handed alpha
Helix 54	AF9	D	485	491	Right-handed alpha
Helix 55	AG1	D	493	506	Right-handed alpha
Helix 56	AG2	D	508	511	Right-handed 310
Helix 57	AG3	D	521	525	Right-handed 310
Helix 58	AG4	D	538	561	Right-handed alpha
Helix 59	AG5	D	563	583	Right-handed alpha
Helix 60	AG6	D	602	609	Right-handed alpha
Helix 61	AG7	D	646	653	Right-handed alpha
Helix 62	AG8	D	653	664	Right-handed alpha
Helix 63	AG9	D	669	678	Right-handed alpha
Helix 64	AH1	D	679	683	Right-handed 310
Helix 65	AH2	D	685	695	Right-handed alpha
Helix 66	AH3	D	709	711	Right-handed 310
Helix 67	AH4	D	729	731	Right-handed 310
Helix 68	AH5	D	732	737	Right-handed alpha
Helix 69	AH6	D	752	762	Right-handed alpha
Helix 70	AH7	D	764	768	Right-handed 310
Helix 71	AH8	D	783	794	Right-handed alpha
Helix 72	AH9	D	807	818	Right-handed alpha
Helix 73	AI1	D	845	855	Right-handed alpha
Helix 74	AI2	D	876	890	Right-handed alpha
Helix 75	AI3	D	892	898	Right-handed alpha
Helix 76	AI4	D	907	922	Right-handed alpha
Helix 77	AI5	D	924	946	Right-handed alpha
Helix 78	AI6	D	950	954	Right-handed 310
Helix 79	AI7	D	959	980	Right-handed alpha
Helix 80	AI8	D	984	1015	Right-handed alpha
Helix 81	AI9	D	1018	1026	Right-handed alpha
Helix 82	AJ1	D	1031	1040	Right-handed alpha
Helix 83	AJ2	D	1066	1085	Right-handed alpha
Helix 84	AJ3	D	1091	1103	Right-handed alpha
Helix 85	AJ4	D	1136	1145	Right-handed alpha
Helix 86	AJ5	D	1167	1180	Right-handed alpha
Helix 87	AJ6	D	1201	1206	Right-handed alpha
Helix 88	AJ7	D	1220	1234	Right-handed alpha
Helix 89	AJ8	D	1255	1264	Right-handed alpha
Helix 90	AJ9	D	1331	1358	Right-handed alpha
Helix 91	AK1	D	1364	1376	Right-handed alpha
Helix 92	AK2	D	1423	1430	Right-handed alpha
Helix 93	AK3	D	1433	1438	Right-handed alpha
Helix 94	AK4	D	1442	1454	Right-handed alpha
Helix 95	AK5	D	1462	1467	Right-handed alpha
Helix 96	AK6	D	1474	1477	Right-handed 310
Helix 97	AK7	D	1478	1483	Right-handed alpha
Helix 98	AK8	D	1490	1493	Right-handed 310
Helix 99	AK9	D	1494	1500	Right-handed alpha
Helix 100	AL1	E	5	12	Right-handed alpha
Helix 101	AL2	E	15	33	Right-handed alpha
Helix 102	AL3	E	41	45	Right-handed 310
Helix 103	AL4	E	59	70	Right-handed alpha
Helix 104	AL5	E	88	93	Right-handed alpha
Helix 105	AL6	F	79	85	Right-handed alpha
Helix 106	AL7	F	95	121	Right-handed alpha
Helix 107	AL8	F	123	137	Right-handed alpha
Helix 108	AL9	F	154	165	Right-handed alpha
Helix 109	AM1	F	167	191	Right-handed alpha
Helix 110	AM2	F	191	200	Right-handed alpha
Helix 111	AM3	F	208	227	Right-handed alpha
Helix 112	AM4	F	234	255	Right-handed alpha
Helix 113	AM5	F	261	283	Right-handed alpha
Helix 114	AM6	F	287	296	Right-handed alpha
Helix 115	AM7	F	300	312	Right-handed alpha
Helix 116	AM8	F	328	333	Right-handed 310
Helix 117	AM9	F	340	360	Right-handed alpha
Helix 118	AN1	F	362	373	Right-handed alpha
Helix 119	AN2	F	381	386	Right-handed alpha
Helix 120	AN3	F	393	395	Right-handed 310
Helix 121	AN4	F	396	415	Right-handed alpha
Helix 122	AN5	F	417	422	Right-handed 310

There are 45 sheets in PDB entry 5TMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	15	first strand
Strand 2	A	20	28	anti-parallel
Strand 3	A	189	201	anti-parallel
Strand 4	A	174	186	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	103	first strand
Strand 2	A	138	147	anti-parallel
Strand 3	A	50	58	anti-parallel
Strand 4	A	164	166	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	120	122	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	128	132	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	169	170	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	16	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	189	201	anti-parallel
Strand 4	B	174	186	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	104	first strand
Strand 2	B	137	148	anti-parallel
Strand 3	B	49	58	anti-parallel
Strand 4	B	165	166	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	120	122	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	130	131	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	169	170	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	899	902	parallel
Strand 3	C	579	580	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	56	first strand
Strand 2	C	64	66	anti-parallel
Strand 3	C	100	101	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	73	first strand
Strand 2	C	91	95	anti-parallel
Strand 3	C	117	119	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	132	136	anti-parallel
Strand 3	C	392	394	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	334	first strand
Strand 2	C	138	142	anti-parallel
Strand 3	C	409	411	parallel
Strand 4	C	453	454	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	158	163	anti-parallel
Strand 3	C	172	174	anti-parallel
Strand 4	C	183	185	anti-parallel
Strand 5	C	190	192	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	461	first strand
Strand 2	C	467	475	anti-parallel
Strand 3	C	478	486	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	461	first strand
Strand 2	C	467	475	anti-parallel
Strand 3	C	531	533	anti-parallel
Strand 4	C	495	497	parallel
Strand 5	C	513	517	anti-parallel
Strand 6	C	520	524	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	503	504	first strand
Strand 2	C	507	508	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	596	first strand
Strand 2	C	654	657	anti-parallel
Strand 3	C	640	641	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	620	624	first strand
Strand 2	C	610	615	anti-parallel
Strand 3	C	601	607	anti-parallel
Strand 4	C	648	649	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	629	630	first strand
Strand 2	C	636	637	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	661	662	first strand
Strand 2	C	665	666	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	971	972	first strand
Strand 2	C	987	996	anti-parallel
Strand 3	C	838	840	anti-parallel
Strand 4	C	846	853	anti-parallel
Strand 5	C	688	691	parallel
Strand 6	C	869	871	anti-parallel
Strand 7	C	670	676	parallel
Strand 8	C	987	996	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	702	713	first strand
Strand 2	C	819	831	anti-parallel
Strand 3	C	798	807	anti-parallel
Strand 4	C	748	749	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	721	722	first strand
Strand 2	C	758	761	anti-parallel
Strand 3	C	785	787	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	754	756	first strand
Strand 2	C	790	791	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1008	first strand
Strand 2	D	626	633	anti-parallel
Strand 3	D	744	748	anti-parallel
Strand 4	D	700	703	anti-parallel
Strand 5	D	713	721	anti-parallel
Strand 6	D	641	645	parallel
Strand 7	D	726	728	anti-parallel
Strand 8	D	626	633	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1030	1033	first strand
Strand 2	D	620	623	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1097	1102	first strand
Strand 2	D	7	12	anti-parallel
Strand 3	D	1456	1458	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	100	first strand
Strand 2	D	513	519	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	132	136	anti-parallel
Strand 3	D	453	455	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	170	first strand
Strand 2	D	392	396	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	341	first strand
Strand 2	D	210	220	anti-parallel
Strand 3	D	344	346	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	341	first strand
Strand 2	D	210	220	anti-parallel
Strand 3	D	383	387	anti-parallel
Strand 4	D	360	361	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	225	first strand
Strand 2	D	331	333	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	353	first strand
Strand 2	D	366	369	anti-parallel
Strand 3	D	377	378	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	401	first strand
Strand 2	D	444	448	anti-parallel
Strand 3	D	433	435	anti-parallel
Strand 4	D	414	415	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	529	first strand
Strand 2	D	535	537	anti-parallel
Strand 3	F	315	316	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	842	843	first strand
Strand 2	D	864	868	parallel
Strand 3	D	871	875	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1118	1121	first strand
Strand 2	D	1185	1189	anti-parallel
Strand 3	D	1148	1149	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1153	1155	first strand
Strand 2	D	1158	1160	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1300	1304	first strand
Strand 2	D	1290	1295	anti-parallel
Strand 3	D	1279	1285	anti-parallel
Strand 4	D	1318	1319	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1392	1394	first strand
Strand 2	D	1378	1383	anti-parallel
Strand 3	D	1416	1419	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1485	1488	first strand
Strand 2	E	73	76	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TMF