Analysis of interatomic Contacts of Structural Units in PDB entry:
5TMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TMH entry

There are 2 chains in PDB entry 5TMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6SER 887
B
 GLU 6TYR 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 5TMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
20 29Right-handed alpha
Helix 3
AA3
A
37 47Right-handed alpha
Helix 4
AA4
A
57 67Right-handed alpha
Helix 5
AA5
A
85 92Right-handed alpha
Helix 6
AA6
A
120 122Right-handed 310
Helix 7
AA7
A
131 135Right-handed 310
Helix 8
AA8
A
153 174Right-handed alpha
Helix 9
AA9
A
188 203Right-handed alpha
Helix 10
AB1
A
228 244Right-handed alpha
Helix 11
AB2
A
274 289Right-handed alpha
Helix 12
AB3
A
323 330Right-handed alpha
Helix 13
AB4
A
331 334Right-handed 310
Helix 14
AB5
A
336 341Right-handed alpha
Helix 15
AB6
A
348 360Right-handed alpha
Helix 16
AB7
A
368 387Right-handed alpha
Helix 17
AB8
A
396 402Right-handed alpha
Helix 18
AB9
A
422 428Right-handed alpha
Helix 19
AC1
A
429 445Right-handed alpha
Helix 20
AC2
A
479 491Right-handed alpha
Helix 21
AC3
A
491 496Right-handed alpha
Helix 22
AC4
A
500 505Right-handed alpha
Helix 23
AC5
A
515 526Right-handed alpha
Helix 24
AC6
A
538 542Right-handed 310
Helix 25
AC7
A
544 552Right-handed alpha
Helix 26
AC8
A
553 558Right-handed 310
Helix 27
AC9
A
559 573Right-handed alpha
Helix 28
AD1
A
586 588Right-handed 310
Helix 29
AD2
A
607 628Right-handed alpha
Helix 30
AD3
A
642 658Right-handed alpha
Helix 31
AD4
A
673 679Right-handed 310
Helix 32
AD5
A
680 686Right-handed alpha
Helix 33
AD6
A
704 708Right-handed 310
Helix 34
AD7
A
732 741Right-handed alpha
Helix 35
AD8
A
750 768Right-handed alpha
Helix 36
AD9
A
771 785Right-handed alpha
Helix 37
AE1
A
810 820Right-handed alpha
Helix 38
AE2
A
834 838Right-handed 310
Helix 39
AE3
A
842 849Right-handed alpha
Helix 40
AE4
A
855 864Right-handed alpha
Helix 41
AE5
A
864 877Right-handed alpha
Helix 42
AE6
B
7 18Right-handed alpha
Helix 43
AE7
B
20 29Right-handed alpha
Helix 44
AE8
B
37 46Right-handed alpha
Helix 45
AE9
B
57 67Right-handed alpha
Helix 46
AF1
B
85 92Right-handed alpha
Helix 47
AF2
B
120 122Right-handed 310
Helix 48
AF3
B
131 135Right-handed 310
Helix 49
AF4
B
153 174Right-handed alpha
Helix 50
AF5
B
188 203Right-handed alpha
Helix 51
AF6
B
228 245Right-handed alpha
Helix 52
AF7
B
274 289Right-handed alpha
Helix 53
AF8
B
323 330Right-handed alpha
Helix 54
AF9
B
331 334Right-handed 310
Helix 55
AG1
B
336 341Right-handed alpha
Helix 56
AG2
B
348 360Right-handed alpha
Helix 57
AG3
B
368 387Right-handed alpha
Helix 58
AG4
B
396 402Right-handed alpha
Helix 59
AG5
B
422 428Right-handed alpha
Helix 60
AG6
B
429 444Right-handed alpha
Helix 61
AG7
B
479 491Right-handed alpha
Helix 62
AG8
B
491 496Right-handed alpha
Helix 63
AG9
B
500 505Right-handed alpha
Helix 64
AH1
B
515 526Right-handed alpha
Helix 65
AH2
B
538 542Right-handed 310
Helix 66
AH3
B
544 552Right-handed alpha
Helix 67
AH4
B
553 558Right-handed 310
Helix 68
AH5
B
559 573Right-handed alpha
Helix 69
AH6
B
586 588Right-handed 310
Helix 70
AH7
B
607 628Right-handed alpha
Helix 71
AH8
B
642 658Right-handed alpha
Helix 72
AH9
B
673 679Right-handed 310
Helix 73
AI1
B
680 686Right-handed alpha
Helix 74
AI2
B
704 708Right-handed 310
Helix 75
AI3
B
732 741Right-handed alpha
Helix 76
AI4
B
750 768Right-handed alpha
Helix 77
AI5
B
771 785Right-handed alpha
Helix 78
AI6
B
810 820Right-handed alpha
Helix 79
AI7
B
834 838Right-handed 310
Helix 80
AI8
B
842 849Right-handed alpha
Helix 81
AI9
B
855 864Right-handed alpha
Helix 82
AJ1
B
864 877Right-handed alpha
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There are 14 sheets in PDB entry 5TMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
252 254parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
97 103parallel
Strand 3
A
75 80parallel
Strand 4
A
142 145parallel
Strand 5
A
178 183parallel
Strand 6
A
219 222anti-parallel
Strand 7
A
205 207anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
305 311anti-parallel
Strand 3
A
590 597anti-parallel
Strand 4
A
577 584anti-parallel
Strand 5
A
453 458parallel
Strand 6
A
473 478anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
742 743anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 344first strand
Strand 2
A
461 463anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
660 663first strand
Strand 2
A
666 669anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 719first strand
Strand 2
A
725 730anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
252 254parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
97 103parallel
Strand 3
B
75 80parallel
Strand 4
B
142 145parallel
Strand 5
B
178 183parallel
Strand 6
B
219 222anti-parallel
Strand 7
B
205 207anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 294first strand
Strand 2
B
305 311anti-parallel
Strand 3
B
590 597anti-parallel
Strand 4
B
577 584anti-parallel
Strand 5
B
453 458parallel
Strand 6
B
473 478anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 322first strand
Strand 2
B
742 743anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 344first strand
Strand 2
B
461 463anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
660 663first strand
Strand 2
B
666 669anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
714 719first strand
Strand 2
B
725 730anti-parallel
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