Analysis of interatomic Contacts of Structural Units in PDB entry:
5TMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TMP entry

There is 1 chain in PDB entry 5TMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2LEU 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5TMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
45 55Right-handed alpha
Helix 3
3
A
67 84Right-handed alpha
Helix 4
4
A
86 92Right-handed alpha
Helix 5
5
A
102 108Right-handed alpha
Helix 6
6
A
117 128Right-handed alpha
Helix 7
7
A
143 153Right-handed alpha
Helix 8
8
A
164 180Right-handed alpha
Helix 9
9
A
193 209Right-handed alpha
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There is 1 sheet ( A) in PDB entry 5TMP.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 188first strand
Strand 2
A
135 140parallel
Strand 3
A
5 10parallel
Strand 4
A
95 99parallel
Strand 5
A
35 39parallel
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