Analysis of interatomic Contacts of Structural Units in PDB entry:
5TNL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TNL entry

There are 4 chains in PDB entry 5TNL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 25	HIS 320
B	ALA 25	HIS 325
C	ALA 25	HIS 325
D	ALA 25	HIS 325

There are 63 helices in PDB entry 5TNL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	71	Right-handed 310
Helix 2	AA2	A	73	78	Right-handed alpha
Helix 3	AA3	A	102	118	Right-handed alpha
Helix 4	AA4	A	129	134	Right-handed alpha
Helix 5	AA5	A	135	142	Right-handed alpha
Helix 6	AA6	A	158	164	Right-handed 310
Helix 7	AA7	A	176	183	Right-handed alpha
Helix 8	AA8	A	186	193	Right-handed alpha
Helix 9	AA9	A	195	207	Right-handed alpha
Helix 10	AB1	A	210	214	Right-handed 310
Helix 11	AB2	A	215	227	Right-handed alpha
Helix 12	AB3	A	228	241	Right-handed alpha
Helix 13	AB4	A	241	253	Right-handed alpha
Helix 14	AB5	A	274	284	Right-handed alpha
Helix 15	AB6	A	298	303	Right-handed alpha
Helix 16	AB7	A	303	316	Right-handed alpha
Helix 17	AB8	B	66	71	Right-handed 310
Helix 18	AB9	B	72	78	Right-handed alpha
Helix 19	AC1	B	102	118	Right-handed alpha
Helix 20	AC2	B	129	134	Right-handed alpha
Helix 21	AC3	B	135	142	Right-handed alpha
Helix 22	AC4	B	158	164	Right-handed 310
Helix 23	AC5	B	176	183	Right-handed alpha
Helix 24	AC6	B	186	193	Right-handed alpha
Helix 25	AC7	B	195	207	Right-handed alpha
Helix 26	AC8	B	215	228	Right-handed alpha
Helix 27	AC9	B	228	241	Right-handed alpha
Helix 28	AD1	B	241	253	Right-handed alpha
Helix 29	AD2	B	274	284	Right-handed alpha
Helix 30	AD3	B	298	303	Right-handed alpha
Helix 31	AD4	B	303	317	Right-handed alpha
Helix 32	AD5	C	66	71	Right-handed 310
Helix 33	AD6	C	72	78	Right-handed alpha
Helix 34	AD7	C	102	118	Right-handed alpha
Helix 35	AD8	C	129	134	Right-handed alpha
Helix 36	AD9	C	135	142	Right-handed alpha
Helix 37	AE1	C	158	164	Right-handed 310
Helix 38	AE2	C	176	183	Right-handed alpha
Helix 39	AE3	C	186	193	Right-handed alpha
Helix 40	AE4	C	195	207	Right-handed alpha
Helix 41	AE5	C	210	214	Right-handed 310
Helix 42	AE6	C	215	227	Right-handed alpha
Helix 43	AE7	C	228	241	Right-handed alpha
Helix 44	AE8	C	241	253	Right-handed alpha
Helix 45	AE9	C	274	282	Right-handed alpha
Helix 46	AF1	C	298	303	Right-handed alpha
Helix 47	AF2	C	303	316	Right-handed alpha
Helix 48	AF3	D	66	71	Right-handed 310
Helix 49	AF4	D	72	78	Right-handed alpha
Helix 50	AF5	D	102	118	Right-handed alpha
Helix 51	AF6	D	129	134	Right-handed alpha
Helix 52	AF7	D	135	142	Right-handed alpha
Helix 53	AF8	D	158	164	Right-handed 310
Helix 54	AF9	D	176	183	Right-handed alpha
Helix 55	AG1	D	186	193	Right-handed alpha
Helix 56	AG2	D	195	207	Right-handed alpha
Helix 57	AG3	D	210	214	Right-handed 310
Helix 58	AG4	D	215	227	Right-handed alpha
Helix 59	AG5	D	228	241	Right-handed alpha
Helix 60	AG6	D	241	253	Right-handed alpha
Helix 61	AG7	D	274	282	Right-handed alpha
Helix 62	AG8	D	298	303	Right-handed alpha
Helix 63	AG9	D	303	317	Right-handed alpha

There are 8 sheets in PDB entry 5TNL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	41	first strand
Strand 2	A	44	52	anti-parallel
Strand 3	A	82	86	anti-parallel
Strand 4	A	56	60	parallel
Strand 5	A	123	128	parallel
Strand 6	A	146	152	parallel
Strand 7	A	261	266	parallel
Strand 8	A	287	292	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	171	172	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	41	first strand
Strand 2	B	44	52	anti-parallel
Strand 3	B	82	86	anti-parallel
Strand 4	B	56	60	parallel
Strand 5	B	123	128	parallel
Strand 6	B	146	152	parallel
Strand 7	B	261	266	parallel
Strand 8	B	287	292	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	171	172	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	41	first strand
Strand 2	C	44	52	anti-parallel
Strand 3	C	82	86	anti-parallel
Strand 4	C	56	60	parallel
Strand 5	C	123	128	parallel
Strand 6	C	146	152	parallel
Strand 7	C	261	266	parallel
Strand 8	C	287	292	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	171	172	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	41	first strand
Strand 2	D	44	52	anti-parallel
Strand 3	D	82	86	anti-parallel
Strand 4	D	56	60	parallel
Strand 5	D	123	128	parallel
Strand 6	D	146	152	parallel
Strand 7	D	261	266	parallel
Strand 8	D	287	292	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	168	first strand
Strand 2	D	171	172	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TNL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TNL