Analysis of interatomic Contacts of Structural Units in PDB entry:
5TNU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TNU entry

There are 2 chains in PDB entry 5TNU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1GLU 439
B
 GLY -2ILE 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5TNU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 46Right-handed alpha
Helix 2
AA2
A
70 82Right-handed alpha
Helix 3
AA3
A
95 108Right-handed alpha
Helix 4
AA4
A
117 132Right-handed alpha
Helix 5
AA5
A
154 165Right-handed alpha
Helix 6
AA6
A
176 179Right-handed 310
Helix 7
AA7
A
183 190Right-handed alpha
Helix 8
AA8
A
208 211Right-handed 310
Helix 9
AA9
A
212 217Right-handed alpha
Helix 10
AB1
A
225 231Right-handed alpha
Helix 11
AB2
A
247 269Right-handed alpha
Helix 12
AB3
A
274 286Right-handed alpha
Helix 13
AB4
A
288 308Right-handed alpha
Helix 14
AB5
A
308 322Right-handed alpha
Helix 15
AB6
A
333 345Right-handed alpha
Helix 16
AB7
A
354 367Right-handed alpha
Helix 17
AB8
A
395 399Right-handed 310
Helix 18
AB9
A
400 412Right-handed alpha
Helix 19
AC1
A
428 435Right-handed alpha
Helix 20
AC2
B
35 46Right-handed alpha
Helix 21
AC3
B
70 82Right-handed alpha
Helix 22
AC4
B
95 108Right-handed alpha
Helix 23
AC5
B
117 132Right-handed alpha
Helix 24
AC6
B
154 165Right-handed alpha
Helix 25
AC7
B
176 179Right-handed 310
Helix 26
AC8
B
183 188Right-handed alpha
Helix 27
AC9
B
189 191Right-handed 310
Helix 28
AD1
B
208 211Right-handed 310
Helix 29
AD2
B
212 217Right-handed alpha
Helix 30
AD3
B
291 298Right-handed alpha
Helix 31
AD4
B
299 301Right-handed 310
Helix 32
AD5
B
338 344Right-handed alpha
Helix 33
AD6
B
354 363Right-handed alpha
Helix 34
AD7
B
397 404Right-handed alpha
Helix 35
AD8
B
405 408Right-handed 310
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There are 6 sheets in PDB entry 5TNU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
10 13anti-parallel
Strand 4
A
2 7anti-parallel
Strand 5
A
50 53parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
137 140anti-parallel
Strand 3
A
149 153parallel
Strand 4
A
111 115parallel
Strand 5
A
170 174parallel
Strand 6
A
195 200parallel
Strand 7
A
85 89parallel
Strand 8
A
220 223parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 244first strand
Strand 2
A
419 425parallel
Strand 3
A
390 393parallel
Strand 4
A
327 330parallel
Strand 5
A
374 375parallel
Strand 6
A
348 349parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
28 32anti-parallel
Strand 3
B
10 13anti-parallel
Strand 4
B
2 7anti-parallel
Strand 5
B
50 53parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
137 140anti-parallel
Strand 3
B
149 153parallel
Strand 4
B
111 115parallel
Strand 5
B
170 174parallel
Strand 6
B
195 200parallel
Strand 7
B
85 89parallel
Strand 8
B
220 223parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 331first strand
Strand 2
B
392 395parallel
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