Analysis of interatomic Contacts of Structural Units in PDB entry:
5TNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TNV entry

There is 1 chain in PDB entry 5TNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5TNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
14 17Right-handed 310
Helix 3
AA3
A
25 29Right-handed 310
Helix 4
AA4
A
30 44Right-handed alpha
Helix 5
AA5
A
57 61Right-handed 310
Helix 6
AA6
A
62 76Right-handed alpha
Helix 7
AA7
A
95 110Right-handed alpha
Helix 8
AA8
A
111 114Right-handed 310
Helix 9
AA9
A
127 133Right-handed alpha
Helix 10
AB1
A
135 139Right-handed 310
Helix 11
AB2
A
145 147Right-handed 310
Helix 12
AB3
A
148 166Right-handed alpha
Helix 13
AB4
A
182 194Right-handed alpha
Helix 14
AB5
A
204 209Right-handed alpha
Helix 15
AB6
A
216 225Right-handed alpha
Helix 16
AB7
A
226 228Right-handed 310
Helix 17
AB8
A
253 257Right-handed 310
Helix 18
AB9
A
260 271Right-handed alpha
Helix 19
AC1
A
285 306Right-handed alpha
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There are 3 sheets in PDB entry 5TNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
48 50parallel
Strand 3
A
9 12parallel
Strand 4
A
277 279parallel
Strand 5
A
231 232parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
117 121parallel
Strand 3
A
169 173parallel
Strand 4
A
198 201parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 240first strand
Strand 2
A
247 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il