Analysis of interatomic Contacts of Structural Units in PDB entry:
5TNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TNX entry

There is 1 chain in PDB entry 5TNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6HIS 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5TNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 55Right-handed alpha
Helix 2
AA2
A
100 105Right-handed alpha
Helix 3
AA3
A
107 111Right-handed 310
Helix 4
AA4
A
113 120Right-handed alpha
Helix 5
AA5
A
141 145Right-handed 310
Helix 6
AA6
A
167 175Right-handed 310
Helix 7
AA7
A
176 187Right-handed alpha
Helix 8
AA8
A
203 217Right-handed alpha
Helix 9
AA9
A
227 237Right-handed alpha
Helix 10
AB1
A
249 259Right-handed alpha
Helix 11
AB2
A
271 281Right-handed alpha
Helix 12
AB3
A
303 311Right-handed alpha
Helix 13
AB4
A
323 337Right-handed alpha
Helix 14
AB5
A
341 344Right-handed 310
Helix 15
AB6
A
353 364Right-handed alpha
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There are 4 sheets in PDB entry 5TNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
8 15anti-parallel
Strand 3
A
23 29anti-parallel
Strand 4
A
130 132anti-parallel
Strand 5
A
137 138anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
36 45anti-parallel
Strand 3
A
70 77anti-parallel
Strand 4
A
89 92anti-parallel
Strand 5
A
159 162anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
36 45anti-parallel
Strand 3
A
368 372anti-parallel
Strand 4
A
346 350parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 244first strand
Strand 2
A
220 225parallel
Strand 3
A
196 200parallel
Strand 4
A
262 267parallel
Strand 5
A
282 290parallel
Strand 6
A
313 316parallel
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