Analysis of interatomic Contacts of Structural Units in PDB entry:
5TOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TOJ entry

There are 3 chains in PDB entry 5TOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 27	LEU 547
B	ASN 27	PRO 549
C	ASN 27	PHE 387

There are 64 helices in PDB entry 5TOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	98	Right-handed alpha
Helix 2	AA2	A	138	142	Right-handed 310
Helix 3	AA3	A	148	159	Right-handed alpha
Helix 4	AA4	A	162	171	Right-handed alpha
Helix 5	AA5	A	195	202	Right-handed alpha
Helix 6	AA6	A	203	208	Right-handed alpha
Helix 7	AA7	A	216	239	Right-handed alpha
Helix 8	AA8	A	253	263	Right-handed alpha
Helix 9	AA9	A	267	276	Right-handed alpha
Helix 10	AB1	A	277	284	Right-handed alpha
Helix 11	AB2	A	354	358	Right-handed 310
Helix 12	AB3	A	370	372	Right-handed 310
Helix 13	AB4	A	376	379	Right-handed 310
Helix 14	AB5	A	380	385	Right-handed alpha
Helix 15	AB6	A	473	478	Right-handed 310
Helix 16	AB7	A	492	514	Right-handed alpha
Helix 17	AB8	A	541	544	Right-handed 310
Helix 18	AB9	B	73	98	Right-handed alpha
Helix 19	AC1	B	137	142	Right-handed 310
Helix 20	AC2	B	148	160	Right-handed alpha
Helix 21	AC3	B	162	171	Right-handed alpha
Helix 22	AC4	B	195	202	Right-handed alpha
Helix 23	AC5	B	203	208	Right-handed alpha
Helix 24	AC6	B	216	239	Right-handed alpha
Helix 25	AC7	B	253	263	Right-handed alpha
Helix 26	AC8	B	267	276	Right-handed alpha
Helix 27	AC9	B	277	284	Right-handed alpha
Helix 28	AD1	B	354	358	Right-handed 310
Helix 29	AD2	B	370	372	Right-handed 310
Helix 30	AD3	B	376	379	Right-handed 310
Helix 31	AD4	B	380	385	Right-handed alpha
Helix 32	AD5	B	473	478	Right-handed 310
Helix 33	AD6	B	492	517	Right-handed alpha
Helix 34	AD7	B	541	544	Right-handed 310
Helix 35	AD8	C	73	98	Right-handed alpha
Helix 36	AD9	C	137	142	Right-handed 310
Helix 37	AE1	C	148	159	Right-handed alpha
Helix 38	AE2	C	162	171	Right-handed alpha
Helix 39	AE3	C	195	202	Right-handed alpha
Helix 40	AE4	C	203	208	Right-handed alpha
Helix 41	AE5	C	217	239	Right-handed alpha
Helix 42	AE6	C	253	263	Right-handed alpha
Helix 43	AE7	C	267	276	Right-handed alpha
Helix 44	AE8	C	277	284	Right-handed alpha
Helix 45	AE9	C	327	331	Right-handed 310
Helix 46	AF1	C	354	358	Right-handed 310
Helix 47	AF2	C	370	372	Right-handed 310
Helix 48	AF3	C	376	379	Right-handed 310
Helix 49	AF4	C	380	385	Right-handed alpha
Helix 50	AF5	C	473	478	Right-handed 310
Helix 51	AF6	C	492	515	Right-handed alpha
Helix 52	AF7	C	541	544	Right-handed 310
Helix 53	AF8	D	28	30	Right-handed 310
Helix 54	AF9	D	83	87	Right-handed 310
Helix 55	AG1	D	98	100	Right-handed 310
Helix 56	AG2	D	100	100	Right-handed 310
Helix 57	AG3	E	28	30	Right-handed 310
Helix 58	AG4	E	83	87	Right-handed 310
Helix 59	AG5	E	98	100	Right-handed 310
Helix 60	AG6	E	100	100	Right-handed 310
Helix 61	AG7	F	28	30	Right-handed 310
Helix 62	AG8	F	83	87	Right-handed 310
Helix 63	AG9	F	98	100	Right-handed 310
Helix 64	AH1	F	100	100	Right-handed 310

There are 30 sheets in PDB entry 5TOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	364	368	anti-parallel
Strand 3	A	38	49	parallel
Strand 4	A	308	318	anti-parallel
Strand 5	A	340	345	anti-parallel
Strand 6	A	348	352	anti-parallel
Strand 7	A	373	375	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	364	368	anti-parallel
Strand 3	A	38	49	parallel
Strand 4	A	29	33	anti-parallel
Strand 5	A	466	469	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	186	194	anti-parallel
Strand 3	A	51	60	parallel
Strand 4	A	296	305	anti-parallel
Strand 5	A	286	293	anti-parallel
Strand 6	A	243	244	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	333	336	anti-parallel
Strand 3	A	394	398	anti-parallel
Strand 4	A	490	491	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	411	416	anti-parallel
Strand 3	A	438	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	422	426	anti-parallel
Strand 3	A	449	452	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	533	first strand
Strand 2	A	536	539	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	364	368	anti-parallel
Strand 3	B	38	49	parallel
Strand 4	B	308	318	anti-parallel
Strand 5	B	340	345	anti-parallel
Strand 6	B	348	352	anti-parallel
Strand 7	B	373	375	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	364	368	anti-parallel
Strand 3	B	38	49	parallel
Strand 4	B	29	33	anti-parallel
Strand 5	B	466	469	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	180	first strand
Strand 2	B	186	194	anti-parallel
Strand 3	B	51	60	parallel
Strand 4	B	296	305	anti-parallel
Strand 5	B	286	293	anti-parallel
Strand 6	B	243	244	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	333	336	anti-parallel
Strand 3	B	394	398	anti-parallel
Strand 4	B	490	491	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	411	416	anti-parallel
Strand 3	B	438	443	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	422	426	anti-parallel
Strand 3	B	449	452	anti-parallel
Strand 4	B	455	458	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	533	first strand
Strand 2	B	536	539	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	364	368	anti-parallel
Strand 3	C	38	49	parallel
Strand 4	C	308	318	anti-parallel
Strand 5	C	340	345	anti-parallel
Strand 6	C	348	352	anti-parallel
Strand 7	C	373	375	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	364	368	anti-parallel
Strand 3	C	38	49	parallel
Strand 4	C	29	33	anti-parallel
Strand 5	C	466	469	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	180	first strand
Strand 2	C	186	194	anti-parallel
Strand 3	C	51	60	parallel
Strand 4	C	296	305	anti-parallel
Strand 5	C	286	293	anti-parallel
Strand 6	C	243	244	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	333	336	anti-parallel
Strand 3	C	394	398	anti-parallel
Strand 4	C	490	491	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	407	first strand
Strand 2	C	411	416	anti-parallel
Strand 3	C	438	443	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	434	first strand
Strand 2	C	422	426	anti-parallel
Strand 3	C	449	452	anti-parallel
Strand 4	C	455	458	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	533	first strand
Strand 2	C	536	539	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	96	anti-parallel
Strand 4	D	32	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	57	58	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	96	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	58	first strand
Strand 2	E	46	52	anti-parallel
Strand 3	E	32	39	anti-parallel
Strand 4	E	88	96	anti-parallel
Strand 5	E	102	103	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	58	first strand
Strand 2	E	46	52	anti-parallel
Strand 3	E	32	39	anti-parallel
Strand 4	E	88	96	anti-parallel
Strand 5	E	107	109	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	96	anti-parallel
Strand 4	F	32	39	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	57	58	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	96	anti-parallel
Strand 4	F	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TOJ