Analysis of interatomic Contacts of Structural Units in PDB entry:
5TOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TOO entry

There is 1 chain in PDB entry 5TOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 24GLY 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5TOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 48Right-handed alpha
Helix 2
AA2
A
49 52Right-handed 310
Helix 3
AA3
A
56 64Right-handed alpha
Helix 4
AA4
A
80 89Right-handed alpha
Helix 5
AA5
A
91 96Right-handed alpha
Helix 6
AA6
A
126 131Right-handed alpha
Helix 7
AA7
A
141 150Right-handed alpha
Helix 8
AA8
A
162 171Right-handed alpha
Helix 9
AA9
A
198 207Right-handed alpha
Helix 10
AB1
A
208 214Right-handed alpha
Helix 11
AB2
A
223 227Right-handed 310
Helix 12
AB3
A
253 261Right-handed alpha
Helix 13
AB4
A
262 268Right-handed 310
Helix 14
AB5
A
269 287Right-handed alpha
Helix 15
AB6
A
302 312Right-handed alpha
Helix 16
AB7
A
315 340Right-handed alpha
Helix 17
AB8
A
358 365Right-handed alpha
Helix 18
AB9
A
377 389Right-handed alpha
Helix 19
AC1
A
405 412Right-handed alpha
Helix 20
AC2
A
415 429Right-handed alpha
Helix 21
AC3
A
450 459Right-handed alpha
Helix 22
AC4
A
490 494Right-handed alpha
Helix 23
AC5
A
518 528Right-handed alpha
Helix 24
AC6
A
540 544Right-handed 310
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There are 5 sheets in PDB entry 5TOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
187 190anti-parallel
Strand 3
A
176 180anti-parallel
Strand 4
A
156 159parallel
Strand 5
A
295 301parallel
Strand 6
A
31 37parallel
Strand 7
A
345 350parallel
Strand 8
A
498 502anti-parallel
Strand 9
A
65 67anti-parallel
Strand 10
A
508 510parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 496first strand
Strand 2
A
70 71anti-parallel
Strand 3
A
514 515parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
110 112anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
475 476parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 398first strand
Strand 2
A
401 404anti-parallel
Strand 3
A
467 471anti-parallel
Strand 4
A
433 438anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il