Analysis of interatomic Contacts of Structural Units in PDB entry:
5TOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TOT entry

There are 4 chains in PDB entry 5TOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1SER 257
A
 ASN 259GLN 412
B
 GLY -1SER 257
B
 ASN 259ILE 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5TOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 27Right-handed alpha
Helix 2
AA2
A
50 62Right-handed alpha
Helix 3
AA3
A
76 89Right-handed alpha
Helix 4
AA4
A
92 97Right-handed alpha
Helix 5
AA5
A
107 123Right-handed alpha
Helix 6
AA6
A
142 150Right-handed alpha
Helix 7
AA7
A
169 179Right-handed alpha
Helix 8
AA8
A
201 216Right-handed alpha
Helix 9
AA9
A
232 237Right-handed alpha
Helix 10
AB1
A
237 246Right-handed alpha
Helix 11
AB2
A
262 265Right-handed 310
Helix 12
AB3
A
276 293Right-handed alpha
Helix 13
AB4
A
300 312Right-handed alpha
Helix 14
AB5
A
312 344Right-handed alpha
Helix 15
AB6
A
351 356Right-handed alpha
Helix 16
AB7
A
366 378Right-handed alpha
Helix 17
AB8
A
390 392Right-handed 310
Helix 18
AB9
A
396 411Right-handed alpha
Helix 19
AC1
B
50 62Right-handed alpha
Helix 20
AC2
B
76 89Right-handed alpha
Helix 21
AC3
B
92 97Right-handed alpha
Helix 22
AC4
B
107 123Right-handed alpha
Helix 23
AC5
B
142 150Right-handed alpha
Helix 24
AC6
B
169 179Right-handed alpha
Helix 25
AC7
B
201 215Right-handed alpha
Helix 26
AC8
B
232 237Right-handed alpha
Helix 27
AC9
B
237 246Right-handed alpha
Helix 28
AD1
B
262 265Right-handed 310
Helix 29
AD2
B
276 293Right-handed alpha
Helix 30
AD3
B
300 312Right-handed alpha
Helix 31
AD4
B
312 344Right-handed alpha
Helix 32
AD5
B
350 356Right-handed alpha
Helix 33
AD6
B
366 376Right-handed alpha
Helix 34
AD7
B
390 392Right-handed 310
Helix 35
AD8
B
396 411Right-handed alpha
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There are 8 sheets in PDB entry 5TOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
379 380parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 106first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
218 223parallel
Strand 5
A
185 189parallel
Strand 6
A
133 136parallel
Strand 7
A
155 158parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
167 168anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 362first strand
Strand 2
A
386 388anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
379 380parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 106first strand
Strand 2
B
267 273anti-parallel
Strand 3
B
250 255anti-parallel
Strand 4
B
218 223parallel
Strand 5
B
185 189parallel
Strand 6
B
133 137parallel
Strand 7
B
155 159parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
167 168anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 362first strand
Strand 2
B
386 388anti-parallel
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