Analysis of interatomic Contacts of Structural Units in PDB entry:
5TOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TOV entry

There are 2 chains in PDB entry 5TOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ARG 397
B
 ASN 2GLN 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5TOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
15 26Right-handed alpha
Helix 3
AA3
A
43 56Right-handed alpha
Helix 4
AA4
A
71 81Right-handed alpha
Helix 5
AA5
A
92 106Right-handed alpha
Helix 6
AA6
A
116 125Right-handed alpha
Helix 7
AA7
A
126 132Right-handed 310
Helix 8
AA8
A
140 153Right-handed alpha
Helix 9
AA9
A
179 191Right-handed alpha
Helix 10
AB1
A
205 218Right-handed alpha
Helix 11
AB2
A
228 238Right-handed alpha
Helix 12
AB3
A
244 249Right-handed alpha
Helix 13
AB4
A
266 273Right-handed alpha
Helix 14
AB5
A
292 298Right-handed alpha
Helix 15
AB6
A
324 326Right-handed 310
Helix 16
AB7
A
337 359Right-handed alpha
Helix 17
AB8
A
360 362Right-handed 310
Helix 18
AB9
A
370 386Right-handed alpha
Helix 19
AC1
B
3 13Right-handed alpha
Helix 20
AC2
B
15 26Right-handed alpha
Helix 21
AC3
B
43 56Right-handed alpha
Helix 22
AC4
B
71 80Right-handed alpha
Helix 23
AC5
B
92 106Right-handed alpha
Helix 24
AC6
B
116 125Right-handed alpha
Helix 25
AC7
B
126 131Right-handed 310
Helix 26
AC8
B
140 153Right-handed alpha
Helix 27
AC9
B
164 166Right-handed 310
Helix 28
AD1
B
173 176Right-handed 310
Helix 29
AD2
B
177 191Right-handed alpha
Helix 30
AD3
B
205 218Right-handed alpha
Helix 31
AD4
B
228 238Right-handed alpha
Helix 32
AD5
B
244 249Right-handed alpha
Helix 33
AD6
B
266 273Right-handed alpha
Helix 34
AD7
B
290 298Right-handed alpha
Helix 35
AD8
B
324 326Right-handed 310
Helix 36
AD9
B
337 359Right-handed alpha
Helix 37
AE1
B
360 362Right-handed 310
Helix 38
AE2
B
370 385Right-handed alpha
Helix 39
AE3
B
393 401Right-handed alpha
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There are 4 sheets in PDB entry 5TOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
59 64parallel
Strand 3
A
35 40parallel
Strand 4
A
110 113parallel
Strand 5
A
135 138parallel
Strand 6
A
160 162parallel
Strand 7
A
366 368parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
221 225parallel
Strand 3
A
198 202parallel
Strand 4
A
254 257parallel
Strand 5
A
278 281parallel
Strand 6
A
318 322parallel
Strand 7
A
308 312anti-parallel
Strand 8
A
300 305anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
59 64parallel
Strand 3
B
35 40parallel
Strand 4
B
110 113parallel
Strand 5
B
135 138parallel
Strand 6
B
160 162parallel
Strand 7
B
366 368parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 242first strand
Strand 2
B
221 225parallel
Strand 3
B
198 202parallel
Strand 4
B
254 257parallel
Strand 5
B
278 281parallel
Strand 6
B
318 322parallel
Strand 7
B
308 312anti-parallel
Strand 8
B
300 305anti-parallel
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