Analysis of interatomic Contacts of Structural Units in PDB entry:
5TOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TOW entry

There are 2 chains in PDB entry 5TOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LEU 400
B
 ASN 2GLN 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 5TOW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
15 26Right-handed alpha
Helix 3
AA3
A
43 56Right-handed alpha
Helix 4
AA4
A
71 81Right-handed alpha
Helix 5
AA5
A
92 106Right-handed alpha
Helix 6
AA6
A
116 125Right-handed alpha
Helix 7
AA7
A
126 131Right-handed 310
Helix 8
AA8
A
140 153Right-handed alpha
Helix 9
AA9
A
178 191Right-handed alpha
Helix 10
AB1
A
205 218Right-handed alpha
Helix 11
AB2
A
228 238Right-handed alpha
Helix 12
AB3
A
244 249Right-handed alpha
Helix 13
AB4
A
266 273Right-handed alpha
Helix 14
AB5
A
290 298Right-handed alpha
Helix 15
AB6
A
324 326Right-handed 310
Helix 16
AB7
A
337 359Right-handed alpha
Helix 17
AB8
A
360 362Right-handed 310
Helix 18
AB9
A
370 386Right-handed alpha
Helix 19
AC1
A
393 400Right-handed alpha
Helix 20
AC2
B
3 13Right-handed alpha
Helix 21
AC3
B
15 26Right-handed alpha
Helix 22
AC4
B
43 56Right-handed alpha
Helix 23
AC5
B
71 80Right-handed alpha
Helix 24
AC6
B
92 106Right-handed alpha
Helix 25
AC7
B
116 125Right-handed alpha
Helix 26
AC8
B
126 131Right-handed 310
Helix 27
AC9
B
140 153Right-handed alpha
Helix 28
AD1
B
164 166Right-handed 310
Helix 29
AD2
B
173 176Right-handed 310
Helix 30
AD3
B
177 191Right-handed alpha
Helix 31
AD4
B
205 218Right-handed alpha
Helix 32
AD5
B
228 238Right-handed alpha
Helix 33
AD6
B
244 249Right-handed alpha
Helix 34
AD7
B
266 273Right-handed alpha
Helix 35
AD8
B
290 298Right-handed alpha
Helix 36
AD9
B
324 326Right-handed 310
Helix 37
AE1
B
337 359Right-handed alpha
Helix 38
AE2
B
360 362Right-handed 310
Helix 39
AE3
B
370 386Right-handed alpha
Helix 40
AE4
B
393 401Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5TOW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
59 64parallel
Strand 3
A
35 40parallel
Strand 4
A
110 113parallel
Strand 5
A
135 138parallel
Strand 6
A
160 162parallel
Strand 7
A
366 368parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
221 225parallel
Strand 3
A
198 202parallel
Strand 4
A
254 257parallel
Strand 5
A
278 281parallel
Strand 6
A
318 322parallel
Strand 7
A
308 312anti-parallel
Strand 8
A
300 305anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
59 64parallel
Strand 3
B
35 40parallel
Strand 4
B
110 113parallel
Strand 5
B
135 138parallel
Strand 6
B
160 162parallel
Strand 7
B
366 368parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 242first strand
Strand 2
B
221 225parallel
Strand 3
B
198 202parallel
Strand 4
B
254 257parallel
Strand 5
B
278 281parallel
Strand 6
B
318 322parallel
Strand 7
B
308 312anti-parallel
Strand 8
B
300 305anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il