Analysis of interatomic Contacts of Structural Units in PDB entry:
5TP1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TP1 entry

There are 8 chains in PDB entry 5TP1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 29	ASN 178
B	PRO 29	ASN 178
C	LEU 25	THR 179
D	LEU 25	THR 179
P	GLU 111	THR 131
Q	GLU 111	THR 131
R	PRO 112	VAL 130
S	GLU 111	VAL 130

There are 31 helices in PDB entry 5TP1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	81	Right-handed alpha
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	99	112	Right-handed alpha
Helix 4	AA4	A	120	152	Right-handed alpha
Helix 5	AA5	A	155	158	Right-handed 310
Helix 6	AA6	A	159	168	Right-handed alpha
Helix 7	AA7	B	69	81	Right-handed alpha
Helix 8	AA8	B	82	86	Right-handed 310
Helix 9	AA9	B	99	110	Right-handed alpha
Helix 10	AB1	B	112	116	Right-handed 310
Helix 11	AB2	B	117	153	Right-handed alpha
Helix 12	AB3	B	155	158	Right-handed 310
Helix 13	AB4	B	159	168	Right-handed alpha
Helix 14	AB5	B	172	177	Right-handed alpha
Helix 15	AB6	C	69	82	Right-handed alpha
Helix 16	AB7	C	83	86	Right-handed 310
Helix 17	AB8	C	99	104	Right-handed alpha
Helix 18	AB9	C	105	112	Right-handed alpha
Helix 19	AC1	C	117	122	Right-handed alpha
Helix 20	AC2	C	122	153	Right-handed alpha
Helix 21	AC3	C	155	158	Right-handed 310
Helix 22	AC4	C	159	168	Right-handed alpha
Helix 23	AC5	C	174	179	Right-handed alpha
Helix 24	AC6	D	69	81	Right-handed alpha
Helix 25	AC7	D	82	86	Right-handed 310
Helix 26	AC8	D	99	110	Right-handed alpha
Helix 27	AC9	D	117	152	Right-handed alpha
Helix 28	AD1	D	155	158	Right-handed 310
Helix 29	AD2	D	159	168	Right-handed alpha
Helix 30	AD3	D	172	177	Right-handed alpha
Helix 31	AD4	S	119	123	Right-handed 310

There are 8 sheets in PDB entry 5TP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	44	53	anti-parallel
Strand 3	A	62	68	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	44	53	anti-parallel
Strand 3	A	37	41	anti-parallel
Strand 4	P	113	117	anti-parallel
Strand 5	P	126	129	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	45	53	anti-parallel
Strand 3	B	62	68	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	45	53	anti-parallel
Strand 3	B	37	40	anti-parallel
Strand 4	Q	114	117	anti-parallel
Strand 5	Q	126	129	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	44	53	anti-parallel
Strand 3	C	62	68	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	44	53	anti-parallel
Strand 3	C	37	41	anti-parallel
Strand 4	R	113	117	anti-parallel
Strand 5	R	126	130	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	44	53	anti-parallel
Strand 3	D	62	68	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	44	53	anti-parallel
Strand 3	D	37	41	anti-parallel
Strand 4	S	114	117	anti-parallel
Strand 5	S	126	129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TP1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TP1