Analysis of interatomic Contacts of Structural Units in PDB entry:
5TPB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TPB entry

There are 2 chains in PDB entry 5TPB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 874	GLN 1297
B	SER 877	GLN 1297

There are 8 helices in PDB entry 5TPB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	954	958	Right-handed 310
Helix 2	AA2	A	1080	1093	Right-handed alpha
Helix 3	AA3	A	1210	1215	Right-handed 310
Helix 4	AA4	B	929	933	Right-handed 310
Helix 5	AA5	B	954	958	Right-handed 310
Helix 6	AA6	B	1080	1092	Right-handed alpha
Helix 7	AA7	B	1211	1215	Right-handed 310
Helix 8	AA8	B	1265	1270	Right-handed alpha

There are 16 sheets in PDB entry 5TPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	879	884	anti-parallel
Strand 3	A	1066	1075	anti-parallel
Strand 4	A	914	917	anti-parallel
Strand 5	A	904	906	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	879	884	anti-parallel
Strand 3	A	1066	1075	anti-parallel
Strand 4	A	941	948	anti-parallel
Strand 5	A	1015	1021	anti-parallel
Strand 6	A	1026	1031	anti-parallel
Strand 7	A	1034	1040	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	900	first strand
Strand 2	A	923	928	anti-parallel
Strand 3	A	1052	1058	anti-parallel
Strand 4	A	962	969	anti-parallel
Strand 5	A	972	979	anti-parallel
Strand 6	A	982	988	anti-parallel
Strand 7	A	994	1000	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	936	first strand
Strand 2	A	1047	1048	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1112	1115	first strand
Strand 2	A	1282	1285	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1122	1125	first strand
Strand 2	A	1134	1137	anti-parallel
Strand 3	A	1259	1264	anti-parallel
Strand 4	A	1246	1254	anti-parallel
Strand 5	A	1235	1240	anti-parallel
Strand 6	A	1220	1225	anti-parallel
Strand 7	A	1179	1186	anti-parallel
Strand 8	A	1204	1205	first strand

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1159	1164	first strand
Strand 2	A	1179	1186	anti-parallel
Strand 3	A	1220	1225	anti-parallel
Strand 4	A	1235	1240	anti-parallel
Strand 5	A	1246	1254	anti-parallel
Strand 6	A	1259	1264	anti-parallel
Strand 7	A	1189	1194	first strand
Strand 8	A	1207	1209	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1142	1145	first strand
Strand 2	A	1149	1152	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	888	890	first strand
Strand 2	B	879	883	anti-parallel
Strand 3	B	1066	1075	anti-parallel
Strand 4	B	914	917	anti-parallel
Strand 5	B	904	906	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	888	890	first strand
Strand 2	B	879	883	anti-parallel
Strand 3	B	1066	1075	anti-parallel
Strand 4	B	941	948	anti-parallel
Strand 5	B	1015	1021	anti-parallel
Strand 6	B	1026	1031	anti-parallel
Strand 7	B	1034	1040	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	897	900	first strand
Strand 2	B	923	927	anti-parallel
Strand 3	B	1052	1058	anti-parallel
Strand 4	B	962	969	anti-parallel
Strand 5	B	972	979	anti-parallel
Strand 6	B	982	988	anti-parallel
Strand 7	B	994	1000	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	936	first strand
Strand 2	B	1047	1048	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1112	1115	first strand
Strand 2	B	1282	1285	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1122	1125	first strand
Strand 2	B	1134	1137	anti-parallel
Strand 3	B	1259	1264	anti-parallel
Strand 4	B	1246	1254	anti-parallel
Strand 5	B	1236	1240	anti-parallel
Strand 6	B	1220	1224	anti-parallel
Strand 7	B	1179	1186	anti-parallel
Strand 8	B	1204	1205	first strand

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1160	1164	first strand
Strand 2	B	1179	1186	anti-parallel
Strand 3	B	1220	1224	anti-parallel
Strand 4	B	1236	1240	anti-parallel
Strand 5	B	1246	1254	anti-parallel
Strand 6	B	1259	1264	anti-parallel
Strand 7	B	1189	1194	first strand
Strand 8	B	1207	1209	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1142	1145	first strand
Strand 2	B	1149	1152	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TPB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TPB