Analysis of interatomic Contacts of Structural Units in PDB entry:
5TPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TPI entry

There is 1 chain in PDB entry 5TPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 88PRO 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5TPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 103Right-handed alpha
Helix 2
AA2
A
104 115Right-handed alpha
Helix 3
AA3
A
126 136Right-handed alpha
Helix 4
AA4
A
176 181Right-handed 310
Helix 5
AA5
A
191 205Right-handed alpha
Helix 6
AA6
A
217 227Right-handed alpha
Helix 7
AA7
A
236 240Right-handed alpha
Helix 8
AA8
A
241 246Right-handed 310
Helix 9
AA9
A
254 258Right-handed alpha
Helix 10
AB1
A
272 291Right-handed alpha
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There are 2 sheets in PDB entry 5TPI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 124first strand
Strand 2
A
89 95parallel
Strand 3
A
141 145parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
153 168anti-parallel
Strand 6
A
231 235anti-parallel
Strand 7
A
184 188parallel
Strand 8
A
211 215parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 124first strand
Strand 2
A
89 95parallel
Strand 3
A
141 145parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
153 168anti-parallel
Strand 6
A
248 252anti-parallel
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