Analysis of interatomic Contacts of Structural Units in PDB entry:
5TPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TPM entry

There are 4 chains in PDB entry 5TPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2GLU 250
B
 SER -2SER 236
C
 SER -2ARG 247
D
 SER -2ARG 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5TPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 119Right-handed alpha
Helix 2
AA2
A
120 140Right-handed alpha
Helix 3
AA3
A
142 161Right-handed alpha
Helix 4
AA4
A
163 189Right-handed alpha
Helix 5
AA5
A
194 211Right-handed alpha
Helix 6
AA6
A
213 249Right-handed alpha
Helix 7
AA7
B
-1 119Right-handed alpha
Helix 8
AA8
B
120 140Right-handed alpha
Helix 9
AA9
B
142 161Right-handed alpha
Helix 10
AB1
B
163 189Right-handed alpha
Helix 11
AB2
B
194 211Right-handed alpha
Helix 12
AB3
B
213 236Right-handed alpha
Helix 13
AB4
C
-1 119Right-handed alpha
Helix 14
AB5
C
120 140Right-handed alpha
Helix 15
AB6
C
142 161Right-handed alpha
Helix 16
AB7
C
163 189Right-handed alpha
Helix 17
AB8
C
194 211Right-handed alpha
Helix 18
AB9
C
213 247Right-handed alpha
Helix 19
AC1
D
-1 119Right-handed alpha
Helix 20
AC2
D
120 140Right-handed alpha
Helix 21
AC3
D
142 161Right-handed alpha
Helix 22
AC4
D
163 189Right-handed alpha
Helix 23
AC5
D
194 211Right-handed alpha
Helix 24
AC6
D
213 234Right-handed alpha
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There are no sheets in PDB entry 5TPM
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