Analysis of interatomic Contacts of Structural Units in PDB entry:
5TPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TPN entry

There are 3 chains in PDB entry 5TPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 27LEU 544
H
 VAL 2PRO 228
L
 GLU 1CYS 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5TPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 99Right-handed alpha
Helix 2
AA2
A
138 142Right-handed 310
Helix 3
AA3
A
148 160Right-handed alpha
Helix 4
AA4
A
162 171Right-handed alpha
Helix 5
AA5
A
194 209Right-handed alpha
Helix 6
AA6
A
216 240Right-handed alpha
Helix 7
AA7
A
253 262Right-handed alpha
Helix 8
AA8
A
267 277Right-handed alpha
Helix 9
AA9
A
277 284Right-handed alpha
Helix 10
AB1
A
376 384Right-handed 310
Helix 11
AB2
A
473 478Right-handed 310
Helix 12
AB3
A
492 516Right-handed alpha
Helix 13
AB4
A
541 544Right-handed 310
Helix 14
AB5
H
171 173Right-handed 310
Helix 15
AB6
H
202 204Right-handed 310
Helix 16
AB7
L
95 99Right-handed 310
Helix 17
AB8
L
137 143Right-handed alpha
Helix 18
AB9
L
199 204Right-handed alpha
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There are 18 sheets in PDB entry 5TPN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
286 293anti-parallel
Strand 3
A
296 306anti-parallel
Strand 4
A
38 60anti-parallel
Strand 5
A
29 33anti-parallel
Strand 6
A
465 469parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
364 368anti-parallel
Strand 3
A
38 60parallel
Strand 4
A
186 193parallel
Strand 5
A
177 180anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 375first strand
Strand 2
A
348 351anti-parallel
Strand 3
A
340 345anti-parallel
Strand 4
A
312 318anti-parallel
Strand 5
A
38 60anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 336first strand
Strand 2
A
394 398anti-parallel
Strand 3
A
490 491anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 407first strand
Strand 2
A
411 416anti-parallel
Strand 3
A
438 443anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 434first strand
Strand 2
A
422 426anti-parallel
Strand 3
A
449 452anti-parallel
Strand 4
A
455 458anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 533first strand
Strand 2
A
536 539anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
19 26anti-parallel
Strand 3
H
86 91anti-parallel
Strand 4
H
76 80anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 13first strand
Strand 2
H
125 126parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
65 67first strand
Strand 2
H
50 57anti-parallel
Strand 3
H
38 44anti-parallel
Strand 4
H
101 107anti-parallel
Strand 5
H
115 118anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 139first strand
Strand 2
H
150 160anti-parallel
Strand 3
H
191 200anti-parallel
Strand 4
H
178 180anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 139first strand
Strand 2
H
150 160anti-parallel
Strand 3
H
191 200anti-parallel
Strand 4
H
184 185anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
166 169first strand
Strand 2
H
209 214anti-parallel
Strand 3
H
223 226anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
77 78anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
118 122parallel
Strand 3
L
101 106anti-parallel
Strand 4
L
39 44anti-parallel
Strand 5
L
51 55anti-parallel
Strand 6
L
66 67anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
118 122parallel
Strand 3
L
101 106anti-parallel
Strand 4
L
113 114anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
130 134first strand
Strand 2
L
145 155anti-parallel
Strand 3
L
189 198anti-parallel
Strand 4
L
175 179anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
169 170first strand
Strand 2
L
161 166anti-parallel
Strand 3
L
207 213anti-parallel
Strand 4
L
221 226anti-parallel
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