Analysis of interatomic Contacts of Structural Units in PDB entry:
5TPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TPQ entry

There are 2 chains in PDB entry 5TPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8PRO 453
B
 ASN 9HIS 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5TPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 37Right-handed alpha
Helix 2
AA2
A
54 67Right-handed alpha
Helix 3
AA3
A
74 78Right-handed 310
Helix 4
AA4
A
101 112Right-handed alpha
Helix 5
AA5
A
131 139Right-handed alpha
Helix 6
AA6
A
153 158Right-handed alpha
Helix 7
AA7
A
170 178Right-handed alpha
Helix 8
AA8
A
182 186Right-handed 310
Helix 9
AA9
A
190 199Right-handed alpha
Helix 10
AB1
A
207 213Right-handed 310
Helix 11
AB2
A
224 232Right-handed alpha
Helix 12
AB3
A
239 246Right-handed alpha
Helix 13
AB4
A
276 281Right-handed alpha
Helix 14
AB5
A
298 311Right-handed alpha
Helix 15
AB6
A
324 332Right-handed alpha
Helix 16
AB7
A
334 360Right-handed alpha
Helix 17
AB8
A
425 430Right-handed 310
Helix 18
AB9
A
435 447Right-handed alpha
Helix 19
AC1
B
29 37Right-handed alpha
Helix 20
AC2
B
54 67Right-handed alpha
Helix 21
AC3
B
74 78Right-handed 310
Helix 22
AC4
B
101 112Right-handed alpha
Helix 23
AC5
B
131 139Right-handed alpha
Helix 24
AC6
B
153 158Right-handed alpha
Helix 25
AC7
B
170 178Right-handed alpha
Helix 26
AC8
B
182 186Right-handed 310
Helix 27
AC9
B
190 199Right-handed alpha
Helix 28
AD1
B
208 213Right-handed 310
Helix 29
AD2
B
224 232Right-handed alpha
Helix 30
AD3
B
239 246Right-handed alpha
Helix 31
AD4
B
276 281Right-handed alpha
Helix 32
AD5
B
298 311Right-handed alpha
Helix 33
AD6
B
324 332Right-handed alpha
Helix 34
AD7
B
334 360Right-handed alpha
Helix 35
AD8
B
425 430Right-handed 310
Helix 36
AD9
B
435 447Right-handed alpha
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There are 8 sheets in PDB entry 5TPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
255 258parallel
Strand 3
A
202 206parallel
Strand 4
A
142 150parallel
Strand 5
A
317 323parallel
Strand 6
A
44 50parallel
Strand 7
A
362 367parallel
Strand 8
A
417 422anti-parallel
Strand 9
A
80 85anti-parallel
Strand 10
A
431 434parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
96 97anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
287 288anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
397 402anti-parallel
Strand 3
A
386 391anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 237first strand
Strand 2
B
255 258parallel
Strand 3
B
202 206parallel
Strand 4
B
142 150parallel
Strand 5
B
317 323parallel
Strand 6
B
44 50parallel
Strand 7
B
362 367parallel
Strand 8
B
417 422anti-parallel
Strand 9
B
80 85anti-parallel
Strand 10
B
431 434parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
96 97anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 269first strand
Strand 2
B
287 288anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 377first strand
Strand 2
B
397 402anti-parallel
Strand 3
B
386 391anti-parallel
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