Analysis of interatomic Contacts of Structural Units in PDB entry:
5TPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TPR entry

There are 2 chains in PDB entry 5TPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3GLN 402
B
 ILE 3GLU 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5TPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 46Right-handed alpha
Helix 2
AA2
A
57 75Right-handed alpha
Helix 3
AA3
A
86 90Right-handed 310
Helix 4
AA4
A
91 106Right-handed alpha
Helix 5
AA5
A
118 132Right-handed alpha
Helix 6
AA6
A
133 135Right-handed 310
Helix 7
AA7
A
144 150Right-handed alpha
Helix 8
AA8
A
180 187Right-handed 310
Helix 9
AA9
A
188 207Right-handed alpha
Helix 10
AB1
A
207 224Right-handed alpha
Helix 11
AB2
A
232 255Right-handed alpha
Helix 12
AB3
A
256 258Right-handed 310
Helix 13
AB4
A
265 269Right-handed 310
Helix 14
AB5
A
273 279Right-handed alpha
Helix 15
AB6
A
286 305Right-handed alpha
Helix 16
AB7
A
309 323Right-handed alpha
Helix 17
AB8
A
333 348Right-handed alpha
Helix 18
AB9
A
370 386Right-handed alpha
Helix 19
AC1
A
387 393Right-handed 310
Helix 20
AC2
B
39 46Right-handed alpha
Helix 21
AC3
B
57 74Right-handed alpha
Helix 22
AC4
B
86 90Right-handed 310
Helix 23
AC5
B
91 106Right-handed alpha
Helix 24
AC6
B
118 132Right-handed alpha
Helix 25
AC7
B
133 135Right-handed 310
Helix 26
AC8
B
144 150Right-handed alpha
Helix 27
AC9
B
180 186Right-handed 310
Helix 28
AD1
B
188 207Right-handed alpha
Helix 29
AD2
B
207 224Right-handed alpha
Helix 30
AD3
B
232 255Right-handed alpha
Helix 31
AD4
B
256 258Right-handed 310
Helix 32
AD5
B
265 269Right-handed 310
Helix 33
AD6
B
273 279Right-handed alpha
Helix 34
AD7
B
286 305Right-handed alpha
Helix 35
AD8
B
309 323Right-handed alpha
Helix 36
AD9
B
333 348Right-handed alpha
Helix 37
AE1
B
370 386Right-handed alpha
Helix 38
AE2
B
387 393Right-handed 310
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There are 6 sheets in PDB entry 5TPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
14 29anti-parallel
Strand 3
B
14 29anti-parallel
Strand 4
B
7 10anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 83first strand
Strand 2
A
50 56parallel
Strand 3
A
113 117parallel
Strand 4
A
138 142parallel
Strand 5
A
176 179parallel
Strand 6
A
14 29parallel
Strand 7
B
14 29anti-parallel
Strand 8
B
176 179parallel
Strand 9
B
138 142parallel
Strand 10
B
113 117parallel
Strand 11
B
50 56parallel
Strand 12
B
77 83parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 161first strand
Strand 2
A
164 171anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
363 366anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 161first strand
Strand 2
B
164 171anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 357first strand
Strand 2
B
363 366anti-parallel
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