Analysis of interatomic Contacts of Structural Units in PDB entry:
5TPU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TPU entry

There are 4 chains in PDB entry 5TPU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ILE 132
B
 ILE 2ASN 131
C
 ILE 2ILE 132
D
 HIS 0ASN 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5TPU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
117 121Right-handed 310
Helix 2
AA2
A
124 132Right-handed alpha
Helix 3
AA3
B
117 121Right-handed 310
Helix 4
AA4
B
124 131Right-handed alpha
Helix 5
AA5
C
117 119Right-handed 310
Helix 6
AA6
C
124 131Right-handed alpha
Helix 7
AA7
D
117 121Right-handed 310
Helix 8
AA8
D
124 130Right-handed alpha
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There are 8 sheets in PDB entry 5TPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
87 91anti-parallel
Strand 3
A
58 64anti-parallel
Strand 4
A
107 112anti-parallel
Strand 5
A
35 40anti-parallel
Strand 6
B
18 24anti-parallel
Strand 7
B
12 15anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
18 24anti-parallel
Strand 3
B
35 40anti-parallel
Strand 4
B
107 112anti-parallel
Strand 5
B
58 64anti-parallel
Strand 6
B
87 91anti-parallel
Strand 7
B
5 9anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
95 100anti-parallel
Strand 3
A
67 72anti-parallel
Strand 4
A
77 82anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
95 100anti-parallel
Strand 3
B
67 72anti-parallel
Strand 4
B
77 82anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
87 91anti-parallel
Strand 3
C
58 64anti-parallel
Strand 4
C
107 112anti-parallel
Strand 5
C
35 40anti-parallel
Strand 6
D
18 24anti-parallel
Strand 7
D
12 15anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
18 24anti-parallel
Strand 3
D
35 40anti-parallel
Strand 4
D
107 112anti-parallel
Strand 5
D
58 64anti-parallel
Strand 6
D
87 91anti-parallel
Strand 7
D
5 9anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 82first strand
Strand 2
C
67 72anti-parallel
Strand 3
C
95 100anti-parallel
Strand 4
C
51 53anti-parallel
Strand 5
C
121 122anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 53first strand
Strand 2
D
95 100anti-parallel
Strand 3
D
67 72anti-parallel
Strand 4
D
77 82anti-parallel
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