Analysis of interatomic Contacts of Structural Units in PDB entry:
5TPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TPZ entry

There are 2 chains in PDB entry 5TPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 23GLY 405
D
 PRO 32ARG 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5TPZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 53Right-handed alpha
Helix 2
AA2
A
70 82Right-handed alpha
Helix 3
AA3
A
83 85Right-handed 310
Helix 4
AA4
A
104 115Right-handed alpha
Helix 5
AA5
A
125 130Right-handed 310
Helix 6
AA6
A
143 145Right-handed 310
Helix 7
AA7
A
146 158Right-handed alpha
Helix 8
AA8
A
170 185Right-handed alpha
Helix 9
AA9
A
225 236Right-handed alpha
Helix 10
AB1
A
245 258Right-handed alpha
Helix 11
AB2
A
272 276Right-handed 310
Helix 12
AB3
A
279 283Right-handed 310
Helix 13
AB4
A
297 317Right-handed alpha
Helix 14
AB5
A
338 349Right-handed alpha
Helix 15
AB6
D
77 91Right-handed alpha
Helix 16
AB7
D
106 120Right-handed alpha
Helix 17
AB8
D
128 132Right-handed 310
Helix 18
AB9
D
149 164Right-handed alpha
Helix 19
AC1
D
178 192Right-handed alpha
Helix 20
AC2
D
214 221Right-handed alpha
Helix 21
AC3
D
233 247Right-handed alpha
Helix 22
AC4
D
259 264Right-handed alpha
Helix 23
AC5
D
288 312Right-handed alpha
Helix 24
AC6
D
328 340Right-handed alpha
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There are 6 sheets in PDB entry 5TPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
25 33parallel
Strand 3
A
65 66parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
25 33parallel
Strand 3
A
87 92parallel
Strand 4
A
118 120parallel
Strand 5
A
137 139parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 218first strand
Strand 2
A
163 168parallel
Strand 3
A
239 243parallel
Strand 4
A
267 269parallel
Strand 5
A
287 292parallel
Strand 6
A
372 378anti-parallel
Strand 7
A
381 388anti-parallel
Strand 8
A
393 395anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
65 73first strand
Strand 2
D
34 42parallel
Strand 3
D
97 101parallel
Strand 4
D
123 127parallel
Strand 5
D
143 145parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 204first strand
Strand 2
D
168 173parallel
Strand 3
D
227 231parallel
Strand 4
D
255 257parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
279 282first strand
Strand 2
D
362 367anti-parallel
Strand 3
D
373 379anti-parallel
Strand 4
D
384 386anti-parallel
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