Analysis of interatomic Contacts of Structural Units in PDB entry:
5TQ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TQ2 entry

There are 4 chains in PDB entry 5TQ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 24	VAL 412
B	LEU 34	TRP 390
H	GLU 1	PRO 218
L	ASP 1	PHE 209

There are 30 helices in PDB entry 5TQ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	52	Right-handed alpha
Helix 2	AA2	A	70	82	Right-handed alpha
Helix 3	AA3	A	83	85	Right-handed 310
Helix 4	AA4	A	104	114	Right-handed alpha
Helix 5	AA5	A	125	130	Right-handed 310
Helix 6	AA6	A	143	146	Right-handed 310
Helix 7	AA7	A	147	158	Right-handed alpha
Helix 8	AA8	A	170	186	Right-handed alpha
Helix 9	AA9	A	225	234	Right-handed alpha
Helix 10	AB1	A	245	259	Right-handed alpha
Helix 11	AB2	A	277	282	Right-handed alpha
Helix 12	AB3	A	297	317	Right-handed alpha
Helix 13	AB4	A	338	348	Right-handed alpha
Helix 14	AB5	B	42	46	Right-handed 310
Helix 15	AB6	B	78	91	Right-handed alpha
Helix 16	AB7	B	107	121	Right-handed alpha
Helix 17	AB8	B	129	133	Right-handed 310
Helix 18	AB9	B	150	165	Right-handed alpha
Helix 19	AC1	B	179	194	Right-handed alpha
Helix 20	AC2	B	213	220	Right-handed alpha
Helix 21	AC3	B	232	247	Right-handed alpha
Helix 22	AC4	B	258	263	Right-handed alpha
Helix 23	AC5	B	287	306	Right-handed alpha
Helix 24	AC6	B	334	339	Right-handed alpha
Helix 25	AC7	H	28	32	Right-handed 310
Helix 26	AC8	H	62	65	Right-handed 310
Helix 27	AC9	H	87	91	Right-handed 310
Helix 28	AD1	H	101	103	Right-handed 310
Helix 29	AD2	L	79	83	Right-handed 310
Helix 30	AD3	L	182	187	Right-handed alpha

There are 19 sheets in PDB entry 5TQ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	25	33	parallel
Strand 3	A	87	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	218	first strand
Strand 2	A	163	168	parallel
Strand 3	A	239	243	parallel
Strand 4	A	267	269	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	292	first strand
Strand 2	A	372	377	anti-parallel
Strand 3	A	382	388	anti-parallel
Strand 4	A	393	395	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	359	361	anti-parallel
Strand 3	A	367	368	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	407	408	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	73	first strand
Strand 2	B	35	40	parallel
Strand 3	B	98	101	parallel
Strand 4	B	124	128	parallel
Strand 5	B	144	146	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	170	174	parallel
Strand 3	B	226	230	parallel
Strand 4	B	254	257	parallel
Strand 5	B	277	280	parallel
Strand 6	B	362	366	anti-parallel
Strand 7	B	372	374	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	346	348	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	69	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	72	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	113	116	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	113	116	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	106	109	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	145	151	anti-parallel
Strand 3	H	181	185	anti-parallel
Strand 4	H	175	176	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	200	202	first strand
Strand 2	H	213	215	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	131	139	anti-parallel
Strand 3	L	173	180	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	192	197	anti-parallel
Strand 4	L	208	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TQ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TQ2