Analysis of interatomic Contacts of Structural Units in PDB entry:
5TQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TQM entry

There are 2 chains in PDB entry 5TQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31PRO 345
B
 GLY 31PRO 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5TQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 53Right-handed alpha
Helix 2
AA2
A
67 74Right-handed 310
Helix 3
AA3
A
78 82Right-handed alpha
Helix 4
AA4
A
92 101Right-handed alpha
Helix 5
AA5
A
116 138Right-handed alpha
Helix 6
AA6
A
149 153Right-handed 310
Helix 7
AA7
A
172 179Right-handed alpha
Helix 8
AA8
A
181 202Right-handed alpha
Helix 9
AA9
A
223 234Right-handed alpha
Helix 10
AB1
A
250 263Right-handed alpha
Helix 11
AB2
A
279 290Right-handed alpha
Helix 12
AB3
A
314 319Right-handed alpha
Helix 13
AB4
A
326 341Right-handed alpha
Helix 14
AB5
B
41 53Right-handed alpha
Helix 15
AB6
B
67 71Right-handed 310
Helix 16
AB7
B
78 82Right-handed alpha
Helix 17
AB8
B
92 101Right-handed alpha
Helix 18
AB9
B
116 139Right-handed alpha
Helix 19
AC1
B
149 153Right-handed 310
Helix 20
AC2
B
172 179Right-handed alpha
Helix 21
AC3
B
181 202Right-handed alpha
Helix 22
AC4
B
223 231Right-handed alpha
Helix 23
AC5
B
250 263Right-handed alpha
Helix 24
AC6
B
279 290Right-handed alpha
Helix 25
AC7
B
314 319Right-handed alpha
Helix 26
AC8
B
326 341Right-handed alpha
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There are 4 sheets in PDB entry 5TQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 87first strand
Strand 2
A
57 62parallel
Strand 3
A
33 37parallel
Strand 4
A
105 108parallel
Strand 5
A
143 147parallel
Strand 6
A
205 210parallel
Strand 7
A
271 272parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
244 249parallel
Strand 3
A
275 278anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 87first strand
Strand 2
B
57 62parallel
Strand 3
B
33 37parallel
Strand 4
B
105 108parallel
Strand 5
B
143 147parallel
Strand 6
B
205 210parallel
Strand 7
B
271 272parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
244 249parallel
Strand 3
B
275 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il