Analysis of interatomic Contacts of Structural Units in PDB entry:
5TQO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TQO entry

There is 1 chain in PDB entry 5TQO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 6	LEU 404

There are 92 helices in PDB entry 5TQO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	21	Right-handed alpha
Helix 2	AA2	A	31	36	Right-handed 310
Helix 3	AA3	A	118	122	Right-handed 310
Helix 4	AA4	A	133	137	Right-handed 310
Helix 5	AA5	A	150	154	Right-handed 310
Helix 6	AA6	A	155	157	Right-handed 310
Helix 7	AA7	A	158	171	Right-handed alpha
Helix 8	AA8	A	198	202	Right-handed 310
Helix 9	AA9	A	241	245	Right-handed 310
Helix 10	AB1	A	250	256	Right-handed 310
Helix 11	AB2	A	257	265	Right-handed alpha
Helix 12	AB3	A	265	276	Right-handed alpha
Helix 13	AB4	A	285	291	Right-handed alpha
Helix 14	AB5	A	300	308	Right-handed alpha
Helix 15	AB6	A	312	317	Right-handed 310
Helix 16	AB7	A	330	334	Right-handed 310
Helix 17	AB8	A	338	341	Right-handed 310
Helix 18	AB9	A	342	353	Right-handed alpha
Helix 19	AC1	A	372	377	Right-handed alpha
Helix 20	AC2	A	384	388	Right-handed 310
Helix 21	AC3	A	394	401	Right-handed alpha
Helix 22	AC4	A	409	422	Right-handed alpha
Helix 23	AC5	A	472	497	Right-handed alpha
Helix 24	AC6	A	503	518	Right-handed alpha
Helix 25	AC7	A	522	529	Right-handed alpha
Helix 26	AC8	A	530	533	Right-handed 310
Helix 27	AC9	A	534	546	Right-handed alpha
Helix 28	AD1	A	551	557	Right-handed alpha
Helix 29	AD2	A	559	561	Right-handed 310
Helix 30	AD3	A	562	572	Right-handed alpha
Helix 31	AD4	A	573	574	Right-handed 310
Helix 32	AD5	A	575	579	Right-handed 310
Helix 33	AD6	A	580	588	Right-handed alpha
Helix 34	AD7	A	608	629	Right-handed alpha
Helix 35	AD8	A	630	632	Right-handed 310
Helix 36	AD9	A	635	642	Right-handed alpha
Helix 37	AE1	A	642	655	Right-handed alpha
Helix 38	AE2	A	657	661	Right-handed 310
Helix 39	AE3	A	671	687	Right-handed alpha
Helix 40	AE4	A	687	695	Right-handed alpha
Helix 41	AE5	A	696	702	Right-handed alpha
Helix 42	AE6	A	720	729	Right-handed alpha
Helix 43	AE7	A	729	738	Right-handed alpha
Helix 44	AE8	A	740	755	Right-handed alpha
Helix 45	AE9	A	775	801	Right-handed alpha
Helix 46	AF1	A	802	804	Right-handed 310
Helix 47	AF2	A	805	810	Right-handed alpha
Helix 48	AF3	B	18	20	Right-handed 310
Helix 49	AF4	B	31	36	Right-handed 310
Helix 50	AF5	B	133	137	Right-handed 310
Helix 51	AF6	B	150	154	Right-handed 310
Helix 52	AF7	B	155	157	Right-handed 310
Helix 53	AF8	B	158	171	Right-handed alpha
Helix 54	AF9	B	198	202	Right-handed 310
Helix 55	AG1	B	241	245	Right-handed 310
Helix 56	AG2	B	250	256	Right-handed 310
Helix 57	AG3	B	257	265	Right-handed alpha
Helix 58	AG4	B	265	276	Right-handed alpha
Helix 59	AG5	B	285	291	Right-handed alpha
Helix 60	AG6	B	300	308	Right-handed alpha
Helix 61	AG7	B	312	317	Right-handed 310
Helix 62	AG8	B	330	334	Right-handed 310
Helix 63	AG9	B	338	341	Right-handed 310
Helix 64	AH1	B	342	353	Right-handed alpha
Helix 65	AH2	B	372	377	Right-handed alpha
Helix 66	AH3	B	384	388	Right-handed 310
Helix 67	AH4	B	394	401	Right-handed alpha
Helix 68	AH5	B	409	422	Right-handed alpha
Helix 69	AH6	B	472	497	Right-handed alpha
Helix 70	AH7	B	503	518	Right-handed alpha
Helix 71	AH8	B	522	529	Right-handed alpha
Helix 72	AH9	B	530	533	Right-handed 310
Helix 73	AI1	B	534	546	Right-handed alpha
Helix 74	AI2	B	559	561	Right-handed 310
Helix 75	AI3	B	562	572	Right-handed alpha
Helix 76	AI4	B	573	574	Right-handed 310
Helix 77	AI5	B	575	579	Right-handed 310
Helix 78	AI6	B	580	588	Right-handed alpha
Helix 79	AI7	B	608	629	Right-handed alpha
Helix 80	AI8	B	630	632	Right-handed 310
Helix 81	AI9	B	635	641	Right-handed alpha
Helix 82	AJ1	B	642	655	Right-handed alpha
Helix 83	AJ2	B	657	661	Right-handed 310
Helix 84	AJ3	B	671	687	Right-handed alpha
Helix 85	AJ4	B	687	695	Right-handed alpha
Helix 86	AJ5	B	696	702	Right-handed alpha
Helix 87	AJ6	B	720	729	Right-handed alpha
Helix 88	AJ7	B	729	738	Right-handed alpha
Helix 89	AJ8	B	740	755	Right-handed alpha
Helix 90	AJ9	B	775	801	Right-handed alpha
Helix 91	AK1	B	802	804	Right-handed 310
Helix 92	AK2	B	805	810	Right-handed alpha

There are 14 sheets in PDB entry 5TQO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	79	86	anti-parallel
Strand 3	A	7	16	anti-parallel
Strand 4	A	107	115	anti-parallel
Strand 5	A	123	131	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	40	50	anti-parallel
Strand 3	A	62	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	40	50	anti-parallel
Strand 3	A	94	101	anti-parallel
Strand 4	A	141	144	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	217	218	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	324	326	anti-parallel
Strand 3	A	318	319	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	404	408	anti-parallel
Strand 3	A	430	437	anti-parallel
Strand 4	A	443	451	anti-parallel
Strand 5	A	464	467	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	593	first strand
Strand 2	A	601	603	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	79	86	anti-parallel
Strand 3	B	7	16	anti-parallel
Strand 4	B	107	115	anti-parallel
Strand 5	B	122	131	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	40	50	anti-parallel
Strand 3	B	62	63	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	40	50	anti-parallel
Strand 3	B	94	101	anti-parallel
Strand 4	B	141	144	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	217	218	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	324	326	anti-parallel
Strand 3	B	318	319	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	361	first strand
Strand 2	B	404	408	anti-parallel
Strand 3	B	430	437	anti-parallel
Strand 4	B	443	452	anti-parallel
Strand 5	B	463	467	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	593	first strand
Strand 2	B	601	603	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TQO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TQO