Analysis of interatomic Contacts of Structural Units in PDB entry:
5TQQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TQQ entry

There are 6 chains in PDB entry 5TQQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 48	PRO 683
L	ASP 1	LYS 107
H	ASP 1	VAL 111
B	GLU 48	PRO 683
M	ASP 1	LYS 107
I	ASP 1	VAL 111

There are 62 helices in PDB entry 5TQQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	86	Right-handed alpha
Helix 2	AA2	A	88	115	Right-handed alpha
Helix 3	AA3	A	122	132	Right-handed alpha
Helix 4	AA4	A	135	140	Right-handed alpha
Helix 5	AA5	A	143	158	Right-handed alpha
Helix 6	AA6	A	165	188	Right-handed alpha
Helix 7	AA7	A	193	214	Right-handed alpha
Helix 8	AA8	A	215	228	Right-handed alpha
Helix 9	AA9	A	233	253	Right-handed alpha
Helix 10	AB1	A	278	313	Right-handed alpha
Helix 11	AB2	A	313	323	Right-handed alpha
Helix 12	AB3	A	323	339	Right-handed alpha
Helix 13	AB4	A	340	349	Right-handed alpha
Helix 14	AB5	A	353	362	Right-handed alpha
Helix 15	AB6	A	366	374	Right-handed alpha
Helix 16	AB7	A	386	392	Right-handed 310
Helix 17	AB8	A	397	419	Right-handed alpha
Helix 18	AB9	A	426	448	Right-handed alpha
Helix 19	AC1	A	462	480	Right-handed alpha
Helix 20	AC2	A	482	493	Right-handed alpha
Helix 21	AC3	A	497	516	Right-handed alpha
Helix 22	AC4	A	518	528	Right-handed alpha
Helix 23	AC5	A	546	551	Right-handed alpha
Helix 24	AC6	A	563	574	Right-handed alpha
Helix 25	AC7	A	596	605	Right-handed alpha
Helix 26	AC8	A	619	625	Right-handed alpha
Helix 27	AC9	A	640	652	Right-handed alpha
Helix 28	AD1	A	670	682	Right-handed alpha
Helix 29	AD2	L	79	83	Right-handed 310
Helix 30	AD3	H	62	65	Right-handed 310
Helix 31	AD4	H	87	91	Right-handed 310
Helix 32	AD5	B	49	86	Right-handed alpha
Helix 33	AD6	B	88	115	Right-handed alpha
Helix 34	AD7	B	122	132	Right-handed alpha
Helix 35	AD8	B	135	140	Right-handed alpha
Helix 36	AD9	B	143	158	Right-handed alpha
Helix 37	AE1	B	165	188	Right-handed alpha
Helix 38	AE2	B	193	214	Right-handed alpha
Helix 39	AE3	B	215	228	Right-handed alpha
Helix 40	AE4	B	233	253	Right-handed alpha
Helix 41	AE5	B	278	313	Right-handed alpha
Helix 42	AE6	B	313	323	Right-handed alpha
Helix 43	AE7	B	323	339	Right-handed alpha
Helix 44	AE8	B	340	349	Right-handed alpha
Helix 45	AE9	B	353	362	Right-handed alpha
Helix 46	AF1	B	366	374	Right-handed alpha
Helix 47	AF2	B	386	392	Right-handed 310
Helix 48	AF3	B	397	419	Right-handed alpha
Helix 49	AF4	B	426	448	Right-handed alpha
Helix 50	AF5	B	462	480	Right-handed alpha
Helix 51	AF6	B	482	493	Right-handed alpha
Helix 52	AF7	B	497	516	Right-handed alpha
Helix 53	AF8	B	518	528	Right-handed alpha
Helix 54	AF9	B	546	551	Right-handed alpha
Helix 55	AG1	B	563	574	Right-handed alpha
Helix 56	AG2	B	596	605	Right-handed alpha
Helix 57	AG3	B	619	625	Right-handed alpha
Helix 58	AG4	B	640	652	Right-handed alpha
Helix 59	AG5	B	670	682	Right-handed alpha
Helix 60	AG6	M	79	83	Right-handed 310
Helix 61	AG7	I	62	65	Right-handed 310
Helix 62	AG8	I	87	91	Right-handed 310

There are 16 sheets in PDB entry 5TQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	B	230	232	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	559	first strand
Strand 2	A	578	582	parallel
Strand 3	A	590	595	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	663	669	first strand
Strand 2	A	655	660	anti-parallel
Strand 3	A	633	635	parallel
Strand 4	B	633	635	anti-parallel
Strand 5	B	655	660	parallel
Strand 6	B	663	669	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	86	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	50	anti-parallel
Strand 3	L	33	37	anti-parallel
Strand 4	L	88	90	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	21	25	anti-parallel
Strand 3	H	78	81	anti-parallel
Strand 4	H	70	73	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	35	40	anti-parallel
Strand 4	H	92	98	anti-parallel
Strand 5	H	102	103	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	35	40	anti-parallel
Strand 4	H	92	98	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	559	first strand
Strand 2	B	578	582	parallel
Strand 3	B	590	595	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	86	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	54	first strand
Strand 2	M	45	50	anti-parallel
Strand 3	M	33	37	anti-parallel
Strand 4	M	88	90	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	21	25	anti-parallel
Strand 3	I	78	81	anti-parallel
Strand 4	I	70	73	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	35	40	anti-parallel
Strand 4	I	92	98	anti-parallel
Strand 5	I	102	103	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	35	40	anti-parallel
Strand 4	I	92	98	anti-parallel
Strand 5	I	107	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TQQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TQQ